TnSeqCorr

Top 10 genes with highest correlation to Rv3433c/-:

update plotcorrelationlink to info on gene
Rv0038/- (cc=0.5783) info on Rv0038/-
Rv0407/fgd1 (cc=0.5711) info on Rv0407/fgd1
Rv3223c/sigH (cc=0.5645) info on Rv3223c/sigH
Rv1069c/- (cc=0.535) info on Rv1069c/-
Rv1638/uvrA (cc=0.519) info on Rv1638/uvrA
Rv1112/- (cc=0.4942) info on Rv1112/-
Rv3133c/devR (cc=0.4772) info on Rv3133c/devR
Rv3755c/- (cc=0.472) info on Rv3755c/-
Rv3068c/pgmA (cc=0.4632) info on Rv3068c/pgmA
Rv1408/rpe (cc=0.4629) info on Rv1408/rpe

Correlation of Rv3433c/- with Rv3755c/-

Normalized LFCs for Rv3433c/-:
(description and provenance of datasets)
Rv3433c/-Rv3755c/-
Fe_supp_jason_reseq

1.579

0.706

low_pH_jason_reseq

-1.367

-0.979

NO_jason_reseq

-2.945

-0.969

B6_jason_reseq

-1.446

-2.07

MHCII_jason_reseq

-0.497

-2.8

Isoniazid02

2.231

3.111

Rifampicin4

1.083

-0.344

Ethambutol3

0.672

0.705

Meropenem3

0.334

1.452

Vancomycin16

0.273

0.382

Rv2680_day32

-0.375

-1.501

H37Rv_KO_MarP

0.945

1.008

hypoxia_3wks

-4.243

-1.232

hypoxia_6wks

-3.926

-1.029

glycerol

0.513

-0.471

cholesterol

1.221

1.302

AJ

-0.086

0.129

Bibs02

0.662

-0.034

Bibs02c

0.411

0.0

BL6

-0.303

-0.384

BL6a

0.267

0.558

BXD01

-0.149

0.347

BXD010

-0.566

0.999

BXD011

0.0

-0.424

BXD03

-0.525

1.706

BXD04

0.044

1.988

BXD05

-0.595

-0.052

BXD06

-0.386

1.243

BXD07

-0.612

0.22

BXD08

-0.322

0.775

BXD09

-0.34

0.312

CAST

-1.753

-0.23

CCcont

2.317

1.48

DS01

-0.683

0.45

DS02

-1.498

0.159

DS04

-0.301

0.275

DS0c

0.996

1.53

GP01

0.562

-1.412

GP02

-0.698

-1.324

GP0c

0.437

-1.245

NOD

-1.119

-0.042

NZO

-1.114

-0.419

PWK

0.136

1.142

H37Rv_KO_CtpC

-1.01

0.946

H37Rv_KO_CtpD

0.64

1.742

H37Rv_KO_Rv1272

1.458

0.896

H37Rv_KO_SugABC

-0.24

0.736

H37Rv_KO_MbtN

0.689

0.518

Trans05

-0.577

-0.025

macrophage_unactivated

0.83

0.587

IL1

-1.797

-2.367

Rapamycin

-0.988

-0.853

Tcell

-3.125

0.857

GMCSF

0.314

0.048

IFNab

1.097

-0.112

IFNg

-1.97

-1.89

IFNg_GMCSF1

-1.904

-1.458

Rv1432_day32

-0.894

-1.254

Rv1565c_day32

-0.235

-1.842

secA2_input

-0.384

-1.313

delta_Rv3594

0.145

0.387

delta_Rv3717

-0.76

0.346

delta_Rv3811

0.141

-0.109

delta_Rv0954

1.268

0.903

PonA1

0.15

-0.329

EccD1_KO

-0.201

0.572

EspI_KO

0.374

-0.057

PE35_KO

0.149

0.131

PPE68_KO

0.266

-0.064

glycerol2

1.279

-1.46

lignocerate

-1.777

-1.578

oleate

-0.924

-0.903

phosphatidylcholine

-0.913

-1.55

acetate

-0.095

-0.214

glucAc

-0.423

-0.168

Rv0950ko

0.024

0.549

Rv1096ko

-0.166

-0.362

Rv3684ko

-0.763

0.786

delta_otsA_trehalose

-0.111

-0.952