Top 10 genes with highest correlation to Rv3433c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0038/- | (cc=0.5783) | info on Rv0038/- |
| Rv0407/fgd1 | (cc=0.5711) | info on Rv0407/fgd1 |
| Rv3223c/sigH | (cc=0.5645) | info on Rv3223c/sigH |
| Rv1069c/- | (cc=0.535) | info on Rv1069c/- |
| Rv1638/uvrA | (cc=0.519) | info on Rv1638/uvrA |
| Rv1112/- | (cc=0.4942) | info on Rv1112/- |
| Rv3133c/devR | (cc=0.4772) | info on Rv3133c/devR |
| Rv3755c/- | (cc=0.472) | info on Rv3755c/- |
| Rv3068c/pgmA | (cc=0.4632) | info on Rv3068c/pgmA |
| Rv1408/rpe | (cc=0.4629) | info on Rv1408/rpe |
Correlation of Rv3433c/- with Rv3223c/sigH
Normalized LFCs for Rv3433c/-:
(description and provenance of datasets)
| Rv3433c/- | Rv3223c/sigH | |
| Fe_supp_jason_reseq | 1.579 | 1.377 |
| low_pH_jason_reseq | -1.367 | -1.166 |
| NO_jason_reseq | -2.945 | -1.011 |
| B6_jason_reseq | -1.446 | -1.144 |
| MHCII_jason_reseq | -0.497 | -0.3 |
| Isoniazid02 | 2.231 | -0.799 |
| Rifampicin4 | 1.083 | -0.333 |
| Ethambutol3 | 0.672 | 1.049 |
| Meropenem3 | 0.334 | -0.879 |
| Vancomycin16 | 0.273 | -0.432 |
| Rv2680_day32 | -0.375 | -1.414 |
| H37Rv_KO_MarP | 0.945 | -0.024 |
| hypoxia_3wks | -4.243 | -1.782 |
| hypoxia_6wks | -3.926 | -2.817 |
| glycerol | 0.513 | 1.612 |
| cholesterol | 1.221 | 2.7 |
| AJ | -0.086 | 0.432 |
| Bibs02 | 0.662 | 1.605 |
| Bibs02c | 0.411 | 1.106 |
| BL6 | -0.303 | 0.969 |
| BL6a | 0.267 | 1.435 |
| BXD01 | -0.149 | 0.96 |
| BXD010 | -0.566 | 0.554 |
| BXD011 | 0.0 | 0.712 |
| BXD03 | -0.525 | 1.014 |
| BXD04 | 0.044 | 0.426 |
| BXD05 | -0.595 | 1.074 |
| BXD06 | -0.386 | 0.554 |
| BXD07 | -0.612 | 0.316 |
| BXD08 | -0.322 | 0.857 |
| BXD09 | -0.34 | 0.677 |
| CAST | -1.753 | 0.707 |
| CCcont | 2.317 | 2.402 |
| DS01 | -0.683 | 1.021 |
| DS02 | -1.498 | 0.055 |
| DS04 | -0.301 | 0.52 |
| DS0c | 0.996 | 2.11 |
| GP01 | 0.562 | 1.964 |
| GP02 | -0.698 | 0.301 |
| GP0c | 0.437 | 0.297 |
| NOD | -1.119 | 0.418 |
| NZO | -1.114 | 1.202 |
| PWK | 0.136 | -0.509 |
| H37Rv_KO_CtpC | -1.01 | 1.047 |
| H37Rv_KO_CtpD | 0.64 | 1.055 |
| H37Rv_KO_Rv1272 | 1.458 | 2.343 |
| H37Rv_KO_SugABC | -0.24 | 1.068 |
| H37Rv_KO_MbtN | 0.689 | 2.627 |
| Trans05 | -0.577 | 2.3 |
| macrophage_unactivated | 0.83 | 0.237 |
| IL1 | -1.797 | -3.45 |
| Rapamycin | -0.988 | -1.715 |
| Tcell | -3.125 | -1.352 |
| GMCSF | 0.314 | -0.51 |
| IFNab | 1.097 | 0.65 |
| IFNg | -1.97 | -2.405 |
| IFNg_GMCSF1 | -1.904 | -1.197 |
| Rv1432_day32 | -0.894 | -0.645 |
| Rv1565c_day32 | -0.235 | 0.317 |
| secA2_input | -0.384 | -1.633 |
| delta_Rv3594 | 0.145 | 1.975 |
| delta_Rv3717 | -0.76 | 0.896 |
| delta_Rv3811 | 0.141 | 1.619 |
| delta_Rv0954 | 1.268 | 0.833 |
| PonA1 | 0.15 | -0.444 |
| EccD1_KO | -0.201 | 0.444 |
| EspI_KO | 0.374 | 0.197 |
| PE35_KO | 0.149 | 0.925 |
| PPE68_KO | 0.266 | 1.075 |
| glycerol2 | 1.279 | 0.68 |
| lignocerate | -1.777 | 0.983 |
| oleate | -0.924 | 0.822 |
| phosphatidylcholine | -0.913 | 1.21 |
| acetate | -0.095 | 0.457 |
| glucAc | -0.423 | 0.374 |
| Rv0950ko | 0.024 | -0.06 |
| Rv1096ko | -0.166 | -0.516 |
| Rv3684ko | -0.763 | -0.711 |
| delta_otsA_trehalose | -0.111 | 2.183 |