TnSeqCorr

Top 10 genes with highest correlation to Rv3433c/-:

update plotcorrelationlink to info on gene
Rv0038/- (cc=0.5783) info on Rv0038/-
Rv0407/fgd1 (cc=0.5711) info on Rv0407/fgd1
Rv3223c/sigH (cc=0.5645) info on Rv3223c/sigH
Rv1069c/- (cc=0.535) info on Rv1069c/-
Rv1638/uvrA (cc=0.519) info on Rv1638/uvrA
Rv1112/- (cc=0.4942) info on Rv1112/-
Rv3133c/devR (cc=0.4772) info on Rv3133c/devR
Rv3755c/- (cc=0.472) info on Rv3755c/-
Rv3068c/pgmA (cc=0.4632) info on Rv3068c/pgmA
Rv1408/rpe (cc=0.4629) info on Rv1408/rpe

Correlation of Rv3433c/- with Rv1069c/-

Normalized LFCs for Rv3433c/-:
(description and provenance of datasets)
Rv3433c/-Rv1069c/-
Fe_supp_jason_reseq

1.579

0.51

low_pH_jason_reseq

-1.367

-1.116

NO_jason_reseq

-2.945

-2.129

B6_jason_reseq

-1.446

-0.505

MHCII_jason_reseq

-0.497

-0.212

Isoniazid02

2.231

-0.434

Rifampicin4

1.083

0.796

Ethambutol3

0.672

3.317

Meropenem3

0.334

-0.152

Vancomycin16

0.273

0.844

Rv2680_day32

-0.375

-1.542

H37Rv_KO_MarP

0.945

-0.343

hypoxia_3wks

-4.243

-6.0

hypoxia_6wks

-3.926

-6.0

glycerol

0.513

-0.932

cholesterol

1.221

-1.591

AJ

-0.086

-1.077

Bibs02

0.662

-1.011

Bibs02c

0.411

-0.7

BL6

-0.303

-0.022

BL6a

0.267

-1.233

BXD01

-0.149

-1.445

BXD010

-0.566

-0.725

BXD011

0.0

-1.606

BXD03

-0.525

-1.013

BXD04

0.044

-1.133

BXD05

-0.595

-0.81

BXD06

-0.386

-1.349

BXD07

-0.612

-1.3

BXD08

-0.322

-1.07

BXD09

-0.34

-1.449

CAST

-1.753

-0.506

CCcont

2.317

-0.38

DS01

-0.683

-0.4

DS02

-1.498

0.331

DS04

-0.301

0.485

DS0c

0.996

-0.435

GP01

0.562

-1.571

GP02

-0.698

-1.12

GP0c

0.437

-0.646

NOD

-1.119

-0.158

NZO

-1.114

-1.449

PWK

0.136

-0.389

H37Rv_KO_CtpC

-1.01

0.224

H37Rv_KO_CtpD

0.64

-0.44

H37Rv_KO_Rv1272

1.458

-0.19

H37Rv_KO_SugABC

-0.24

-0.159

H37Rv_KO_MbtN

0.689

-0.108

Trans05

-0.577

-1.106

macrophage_unactivated

0.83

-0.316

IL1

-1.797

-0.908

Rapamycin

-0.988

-0.954

Tcell

-3.125

-0.567

GMCSF

0.314

-1.413

IFNab

1.097

-1.01

IFNg

-1.97

-2.683

IFNg_GMCSF1

-1.904

-2.379

Rv1432_day32

-0.894

-1.872

Rv1565c_day32

-0.235

-0.291

secA2_input

-0.384

1.044

delta_Rv3594

0.145

0.523

delta_Rv3717

-0.76

-0.714

delta_Rv3811

0.141

-0.242

delta_Rv0954

1.268

0.615

PonA1

0.15

0.454

EccD1_KO

-0.201

0.201

EspI_KO

0.374

0.719

PE35_KO

0.149

0.522

PPE68_KO

0.266

0.512

glycerol2

1.279

0.5

lignocerate

-1.777

0.813

oleate

-0.924

-0.221

phosphatidylcholine

-0.913

0.777

acetate

-0.095

0.386

glucAc

-0.423

0.584

Rv0950ko

0.024

0.256

Rv1096ko

-0.166

0.0

Rv3684ko

-0.763

0.269

delta_otsA_trehalose

-0.111

-0.092