TnSeqCorr

Top 10 genes with highest correlation to Rv3433c/-:

update plotcorrelationlink to info on gene
Rv0038/- (cc=0.5783) info on Rv0038/-
Rv0407/fgd1 (cc=0.5711) info on Rv0407/fgd1
Rv3223c/sigH (cc=0.5645) info on Rv3223c/sigH
Rv1069c/- (cc=0.535) info on Rv1069c/-
Rv1638/uvrA (cc=0.519) info on Rv1638/uvrA
Rv1112/- (cc=0.4942) info on Rv1112/-
Rv3133c/devR (cc=0.4772) info on Rv3133c/devR
Rv3755c/- (cc=0.472) info on Rv3755c/-
Rv3068c/pgmA (cc=0.4632) info on Rv3068c/pgmA
Rv1408/rpe (cc=0.4629) info on Rv1408/rpe

Correlation of Rv3433c/- with Rv1408/rpe

Normalized LFCs for Rv3433c/-:
(description and provenance of datasets)
Rv3433c/-Rv1408/rpe
Fe_supp_jason_reseq

1.579

0.458

low_pH_jason_reseq

-1.367

-0.785

NO_jason_reseq

-2.945

-1.231

B6_jason_reseq

-1.446

-0.403

MHCII_jason_reseq

-0.497

0.283

Isoniazid02

2.231

2.123

Rifampicin4

1.083

0.739

Ethambutol3

0.672

0.981

Meropenem3

0.334

0.497

Vancomycin16

0.273

-0.512

Rv2680_day32

-0.375

0.0

H37Rv_KO_MarP

0.945

1.04

hypoxia_3wks

-4.243

-0.77

hypoxia_6wks

-3.926

-1.416

glycerol

0.513

-0.146

cholesterol

1.221

-0.216

AJ

-0.086

0.442

Bibs02

0.662

0.0

Bibs02c

0.411

0.838

BL6

-0.303

-0.091

BL6a

0.267

0.489

BXD01

-0.149

-0.304

BXD010

-0.566

-0.415

BXD011

0.0

0.83

BXD03

-0.525

0.334

BXD04

0.044

0.66

BXD05

-0.595

0.332

BXD06

-0.386

0.254

BXD07

-0.612

0.182

BXD08

-0.322

-0.31

BXD09

-0.34

0.0

CAST

-1.753

-0.167

CCcont

2.317

0.974

DS01

-0.683

0.159

DS02

-1.498

-0.325

DS04

-0.301

1.405

DS0c

0.996

1.332

GP01

0.562

-0.32

GP02

-0.698

-0.353

GP0c

0.437

-0.094

NOD

-1.119

0.555

NZO

-1.114

-0.646

PWK

0.136

0.374

H37Rv_KO_CtpC

-1.01

-0.688

H37Rv_KO_CtpD

0.64

-0.41

H37Rv_KO_Rv1272

1.458

0.0

H37Rv_KO_SugABC

-0.24

-0.321

H37Rv_KO_MbtN

0.689

0.0

Trans05

-0.577

0.0

macrophage_unactivated

0.83

-0.537

IL1

-1.797

1.05

Rapamycin

-0.988

-0.252

Tcell

-3.125

-1.183

GMCSF

0.314

-1.238

IFNab

1.097

1.07

IFNg

-1.97

0.946

IFNg_GMCSF1

-1.904

0.698

Rv1432_day32

-0.894

0.0

Rv1565c_day32

-0.235

0.147

secA2_input

-0.384

-0.952

delta_Rv3594

0.145

0.402

delta_Rv3717

-0.76

-0.522

delta_Rv3811

0.141

-0.348

delta_Rv0954

1.268

0.693

PonA1

0.15

-0.085

EccD1_KO

-0.201

0.526

EspI_KO

0.374

1.417

PE35_KO

0.149

0.683

PPE68_KO

0.266

0.262

glycerol2

1.279

-0.88

lignocerate

-1.777

-0.106

oleate

-0.924

-0.713

phosphatidylcholine

-0.913

-0.542

acetate

-0.095

0.389

glucAc

-0.423

0.797

Rv0950ko

0.024

0.0

Rv1096ko

-0.166

-0.971

Rv3684ko

-0.763

-0.825

delta_otsA_trehalose

-0.111

-0.199