TnSeqCorr

Top 10 genes with highest correlation to Rv3433c/-:

update plotcorrelationlink to info on gene
Rv0038/- (cc=0.5783) info on Rv0038/-
Rv0407/fgd1 (cc=0.5711) info on Rv0407/fgd1
Rv3223c/sigH (cc=0.5645) info on Rv3223c/sigH
Rv1069c/- (cc=0.535) info on Rv1069c/-
Rv1638/uvrA (cc=0.519) info on Rv1638/uvrA
Rv1112/- (cc=0.4942) info on Rv1112/-
Rv3133c/devR (cc=0.4772) info on Rv3133c/devR
Rv3755c/- (cc=0.472) info on Rv3755c/-
Rv3068c/pgmA (cc=0.4632) info on Rv3068c/pgmA
Rv1408/rpe (cc=0.4629) info on Rv1408/rpe

Correlation of Rv3433c/- with Rv3133c/devR

Normalized LFCs for Rv3433c/-:
(description and provenance of datasets)
Rv3433c/-Rv3133c/devR
Fe_supp_jason_reseq

1.579

0.537

low_pH_jason_reseq

-1.367

0.835

NO_jason_reseq

-2.945

-0.942

B6_jason_reseq

-1.446

0.0

MHCII_jason_reseq

-0.497

-0.508

Isoniazid02

2.231

-1.094

Rifampicin4

1.083

0.236

Ethambutol3

0.672

-1.127

Meropenem3

0.334

-0.622

Vancomycin16

0.273

-0.769

Rv2680_day32

-0.375

-0.648

H37Rv_KO_MarP

0.945

0.337

hypoxia_3wks

-4.243

-6.0

hypoxia_6wks

-3.926

-6.0

glycerol

0.513

1.535

cholesterol

1.221

0.041

AJ

-0.086

1.343

Bibs02

0.662

-0.026

Bibs02c

0.411

0.173

BL6

-0.303

1.344

BL6a

0.267

1.406

BXD01

-0.149

0.643

BXD010

-0.566

1.376

BXD011

0.0

0.378

BXD03

-0.525

1.344

BXD04

0.044

1.195

BXD05

-0.595

1.48

BXD06

-0.386

0.467

BXD07

-0.612

1.642

BXD08

-0.322

1.082

BXD09

-0.34

0.767

CAST

-1.753

1.256

CCcont

2.317

0.64

DS01

-0.683

-0.404

DS02

-1.498

-1.0

DS04

-0.301

0.0

DS0c

0.996

-1.42

GP01

0.562

0.571

GP02

-0.698

-0.481

GP0c

0.437

1.617

NOD

-1.119

0.809

NZO

-1.114

-0.147

PWK

0.136

-0.618

H37Rv_KO_CtpC

-1.01

1.85

H37Rv_KO_CtpD

0.64

1.969

H37Rv_KO_Rv1272

1.458

1.306

H37Rv_KO_SugABC

-0.24

0.905

H37Rv_KO_MbtN

0.689

0.057

Trans05

-0.577

1.703

macrophage_unactivated

0.83

-1.269

IL1

-1.797

0.154

Rapamycin

-0.988

-0.239

Tcell

-3.125

-0.782

GMCSF

0.314

-0.829

IFNab

1.097

1.007

IFNg

-1.97

-2.777

IFNg_GMCSF1

-1.904

-2.536

Rv1432_day32

-0.894

-0.271

Rv1565c_day32

-0.235

0.359

secA2_input

-0.384

0.928

delta_Rv3594

0.145

0.73

delta_Rv3717

-0.76

0.164

delta_Rv3811

0.141

1.322

delta_Rv0954

1.268

0.947

PonA1

0.15

0.066

EccD1_KO

-0.201

0.089

EspI_KO

0.374

-0.408

PE35_KO

0.149

-0.417

PPE68_KO

0.266

0.086

glycerol2

1.279

-0.157

lignocerate

-1.777

-0.2

oleate

-0.924

0.328

phosphatidylcholine

-0.913

0.049

acetate

-0.095

-0.53

glucAc

-0.423

-0.837

Rv0950ko

0.024

-1.113

Rv1096ko

-0.166

0.591

Rv3684ko

-0.763

-0.481

delta_otsA_trehalose

-0.111

-0.5