Top 10 genes with highest correlation to Rv3433c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0038/- | (cc=0.5783) | info on Rv0038/- |
| Rv0407/fgd1 | (cc=0.5711) | info on Rv0407/fgd1 |
| Rv3223c/sigH | (cc=0.5645) | info on Rv3223c/sigH |
| Rv1069c/- | (cc=0.535) | info on Rv1069c/- |
| Rv1638/uvrA | (cc=0.519) | info on Rv1638/uvrA |
| Rv1112/- | (cc=0.4942) | info on Rv1112/- |
| Rv3133c/devR | (cc=0.4772) | info on Rv3133c/devR |
| Rv3755c/- | (cc=0.472) | info on Rv3755c/- |
| Rv3068c/pgmA | (cc=0.4632) | info on Rv3068c/pgmA |
| Rv1408/rpe | (cc=0.4629) | info on Rv1408/rpe |
Correlation of Rv3433c/- with Rv1638/uvrA
Normalized LFCs for Rv3433c/-:
(description and provenance of datasets)
| Rv3433c/- | Rv1638/uvrA | |
| Fe_supp_jason_reseq | 1.579 | 2.005 |
| low_pH_jason_reseq | -1.367 | -0.842 |
| NO_jason_reseq | -2.945 | -0.874 |
| B6_jason_reseq | -1.446 | -1.019 |
| MHCII_jason_reseq | -0.497 | -1.251 |
| Isoniazid02 | 2.231 | -0.061 |
| Rifampicin4 | 1.083 | -1.11 |
| Ethambutol3 | 0.672 | 0.542 |
| Meropenem3 | 0.334 | -0.628 |
| Vancomycin16 | 0.273 | -0.764 |
| Rv2680_day32 | -0.375 | 0.0 |
| H37Rv_KO_MarP | 0.945 | -0.563 |
| hypoxia_3wks | -4.243 | -1.204 |
| hypoxia_6wks | -3.926 | -1.817 |
| glycerol | 0.513 | 1.654 |
| cholesterol | 1.221 | 0.773 |
| AJ | -0.086 | -0.242 |
| Bibs02 | 0.662 | -0.294 |
| Bibs02c | 0.411 | 0.382 |
| BL6 | -0.303 | 0.63 |
| BL6a | 0.267 | 0.997 |
| BXD01 | -0.149 | 0.486 |
| BXD010 | -0.566 | -0.206 |
| BXD011 | 0.0 | 0.475 |
| BXD03 | -0.525 | 0.189 |
| BXD04 | 0.044 | 0.372 |
| BXD05 | -0.595 | 0.3 |
| BXD06 | -0.386 | 0.498 |
| BXD07 | -0.612 | 0.194 |
| BXD08 | -0.322 | 0.297 |
| BXD09 | -0.34 | 0.572 |
| CAST | -1.753 | -0.809 |
| CCcont | 2.317 | 2.708 |
| DS01 | -0.683 | -0.12 |
| DS02 | -1.498 | 0.0 |
| DS04 | -0.301 | 0.094 |
| DS0c | 0.996 | 0.652 |
| GP01 | 0.562 | -0.28 |
| GP02 | -0.698 | 0.339 |
| GP0c | 0.437 | 0.942 |
| NOD | -1.119 | -1.126 |
| NZO | -1.114 | -0.701 |
| PWK | 0.136 | -0.433 |
| H37Rv_KO_CtpC | -1.01 | 1.331 |
| H37Rv_KO_CtpD | 0.64 | 0.558 |
| H37Rv_KO_Rv1272 | 1.458 | 0.71 |
| H37Rv_KO_SugABC | -0.24 | 1.472 |
| H37Rv_KO_MbtN | 0.689 | 1.713 |
| Trans05 | -0.577 | 0.344 |
| macrophage_unactivated | 0.83 | 1.382 |
| IL1 | -1.797 | -0.436 |
| Rapamycin | -0.988 | -0.295 |
| Tcell | -3.125 | 0.0 |
| GMCSF | 0.314 | -0.671 |
| IFNab | 1.097 | 0.771 |
| IFNg | -1.97 | -0.679 |
| IFNg_GMCSF1 | -1.904 | -0.625 |
| Rv1432_day32 | -0.894 | -1.562 |
| Rv1565c_day32 | -0.235 | -0.269 |
| secA2_input | -0.384 | 0.783 |
| delta_Rv3594 | 0.145 | 0.39 |
| delta_Rv3717 | -0.76 | -0.415 |
| delta_Rv3811 | 0.141 | 0.095 |
| delta_Rv0954 | 1.268 | 0.499 |
| PonA1 | 0.15 | -0.504 |
| EccD1_KO | -0.201 | 0.329 |
| EspI_KO | 0.374 | -0.128 |
| PE35_KO | 0.149 | 0.817 |
| PPE68_KO | 0.266 | 1.161 |
| glycerol2 | 1.279 | -1.562 |
| lignocerate | -1.777 | -1.816 |
| oleate | -0.924 | -1.904 |
| phosphatidylcholine | -0.913 | -2.088 |
| acetate | -0.095 | -0.143 |
| glucAc | -0.423 | 0.356 |
| Rv0950ko | 0.024 | -0.302 |
| Rv1096ko | -0.166 | -0.663 |
| Rv3684ko | -0.763 | -0.72 |
| delta_otsA_trehalose | -0.111 | 0.081 |