| dataset | investigator | lab | reference | notes | |
|---|---|---|---|---|---|
| Fe_supp_jason_reseq | Yanjia Zhang | Rubin | Zhang (2013) PMID: 24315099 | 7H10 + 1.5 mM Fe | |
| low_pH_jason_reseq | Yanjia Zhang | Rubin | Zhang (2013) PMID: 24315099 | pH 4.5 | |
| NO_jason_reseq | Yanjia Zhang | Rubin | Zhang (2013) PMID: 24315099 | nitric oxide (5 mM DETA-NO) | |
| B6_jason_reseq | Yanjia Zhang | Rubin | Zhang (2013) PMID: 24315099 | C57BL/6 mice | |
| MHCII_jason_reseq | Yanjia Zhang | Rubin | Zhang (2013) PMID: 24315099 | MHCII knockout mice | |
| Isoniazid02 | Weizhen Xu | Ehrt | Xu (2017) PMID: 28893793 | ||
| Rifampicin4 | Weizhen Xu | Ehrt | Xu (2017) PMID: 28893793 | ||
| Ethambutol3 | Weizhen Xu | Ehrt | Xu (2017) PMID: 28893793 | ||
| Meropenem3 | Weizhen Xu | Ehrt | Xu (2017) PMID: 28893793 | ||
| Vancomycin16 | Weizhen Xu | Ehrt | Xu (2017) PMID: 28893793 | ||
| Rv2680_day32 | Subhalaxmi Nambi | Sassetti | DeJesus (2017) PMID: 28334803 | mouse infection of Rv2680 knockout | |
| H37Rv_KO_MarP | Jennifer Small | Ehrt | Small (2013) PMC3642297 | ||
| hypoxia_3wks | Emily Rittershaus | Sassetti | Rittershaus (2018) PMID: 30318462 | ||
| hypoxia_6wks | Emily Rittershaus | Sassetti | Rittershaus (2018) PMID: 30318462 | ||
| glycerol | Jennifer Griffin | Sassetti | Griffin (2011) PMID: 21980284 | M9 minimal medium + glycerol | |
| cholesterol | Jennifer Griffin | Sassetti | Griffin (2011) PMID: 21980284 | M9 minimal medium + cholesterol | |
| AJ | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| Bibs02 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| Bibs02c | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| BL6 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| BL6a | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| BXD01 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| BXD010 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| BXD011 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| BXD03 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| BXD04 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| BXD05 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| BXD06 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| BXD07 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| BXD08 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| BXD09 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| CAST | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| CCcont | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| DS01 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| DS02 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| DS04 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| DS0c | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| GP01 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| GP02 | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| GP0c | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| NOD | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| NZO | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| PWK | Clare Smith | Sassetti | Smith (2022) PMID: 35112666 | H37Rv infection in mouse | |
| H37Rv_KO_CtpC | Ed Long | Sassetti | |||
| H37Rv_KO_CtpD | Ed Long | Sassetti | |||
| H37Rv_KO_Rv1272 | Ed Long | Sassetti | |||
| H37Rv_KO_SugABC | Ed Long | Sassetti | |||
| H37Rv_KO_MbtN | Ed Long | Sassetti | |||
| Trans05 | Ed Long | Sassetti | knockout of a transporter, mouse infection? | ||
| macrophage_unactivated | Andrew Olive | Sassetti | immortalized C57BL/6 macrophages stimulated with cytokines | ||
| IL1 | Andrew Olive | Sassetti | immortalized C57BL/6 macrophages stimulated with cytokines | ||
| Rapamycin | Andrew Olive | Sassetti | immortalized C57BL/6 macrophages stimulated with cytokines | ||
| Tcell | Andrew Olive | Sassetti | immortalized C57BL/6 macrophages stimulated with cytokines | ||
| GMCSF | Andrew Olive | Sassetti | immortalized C57BL/6 macrophages stimulated with cytokines | ||
| IFNab | Andrew Olive | Sassetti | immortalized C57BL/6 macrophages stimulated with cytokines | ||
| IFNg | Andrew Olive | Sassetti | immortalized C57BL/6 macrophages stimulated with cytokines | ||
| IFNg_GMCSF1 | Andrew Olive | Sassetti | immortalized C57BL/6 macrophages stimulated with cytokines | ||
| Rv1432_day32 | Subhalaxmi Nambi | Sassetti | DeJesus (2017) PMID: 28334803 | mouse infection of Rv1432 knockout | |
| Rv1565c_day32 | Subhalaxmi Nambi | Sassetti | DeJesus (2017) PMID: 28334803 | mouse infection of Rv1565c knockout | |
| secA2_input | Kate Zulauf | Braunstein | secA2 knockout | ||
| delta_Rv3594 | Cara Boutte | Rubin | |||
| delta_Rv3717 | Cara Boutte | Rubin | |||
| delta_Rv3811 | Cara Boutte | Rubin | |||
| delta_Rv0954 | Cara Boutte | Rubin | |||
| PonA1 | Karen Kieser | Rubin | Kieser (2015) PMID: 26438867 | knockout of PonA1 | |
| EccD1_KO | Rebecca Audette | Rubin | |||
| EspI_KO | Rebecca Audette | Rubin | |||
| PE35_KO | Rebecca Audette | Rubin | |||
| PPE68_KO | Rebecca Audette | Rubin | |||
| glycerol2 | Ed Long | Sassetti | H37Rv grown on alternative carbon sources | ||
| lignocerate | Ed Long | Sassetti | H37Rv grown on alternative carbon sources | ||
| oleate | Ed Long | Sassetti | H37Rv grown on alternative carbon sources | ||
| phosphatidylcholine | Ed Long | Sassetti | H37Rv grown on alternative carbon sources | ||
| acetate | Ed Long | Sassetti | H37Rv grown on alternative carbon sources | ||
| glucAc | Ed Long | Sassetti | H37Rv grown on alternative carbon sources | ||
| Rv0950ko | Hesper Rego | Rubin | |||
| Rv1096ko | Hesper Rego | Rubin | |||
| Rv3684ko | Hesper Rego | Rubin | |||
| delta_otsA_trehalose | Jan Korte | Kalscheuer | Korte (2016) PMID: 27936238 | knockout of otsA grown in 7H10 supplemented with 500 uM trehalose | |