TnSeqCorr

Top 10 genes with highest correlation to Rv3433c/-:

update plotcorrelationlink to info on gene
Rv0038/- (cc=0.5783) info on Rv0038/-
Rv0407/fgd1 (cc=0.5711) info on Rv0407/fgd1
Rv3223c/sigH (cc=0.5645) info on Rv3223c/sigH
Rv1069c/- (cc=0.535) info on Rv1069c/-
Rv1638/uvrA (cc=0.519) info on Rv1638/uvrA
Rv1112/- (cc=0.4942) info on Rv1112/-
Rv3133c/devR (cc=0.4772) info on Rv3133c/devR
Rv3755c/- (cc=0.472) info on Rv3755c/-
Rv3068c/pgmA (cc=0.4632) info on Rv3068c/pgmA
Rv1408/rpe (cc=0.4629) info on Rv1408/rpe

Correlation of Rv3433c/- with Rv1112/-

Normalized LFCs for Rv3433c/-:
(description and provenance of datasets)
Rv3433c/-Rv1112/-
Fe_supp_jason_reseq

1.579

1.901

low_pH_jason_reseq

-1.367

-1.571

NO_jason_reseq

-2.945

0.315

B6_jason_reseq

-1.446

-0.913

MHCII_jason_reseq

-0.497

0.0

Isoniazid02

2.231

3.87

Rifampicin4

1.083

0.712

Ethambutol3

0.672

1.414

Meropenem3

0.334

0.426

Vancomycin16

0.273

1.602

Rv2680_day32

-0.375

0.109

H37Rv_KO_MarP

0.945

2.428

hypoxia_3wks

-4.243

-2.68

hypoxia_6wks

-3.926

-2.533

glycerol

0.513

2.487

cholesterol

1.221

1.62

AJ

-0.086

1.78

Bibs02

0.662

0.0

Bibs02c

0.411

0.0

BL6

-0.303

1.574

BL6a

0.267

1.964

BXD01

-0.149

1.496

BXD010

-0.566

1.739

BXD011

0.0

0.612

BXD03

-0.525

1.146

BXD04

0.044

1.588

BXD05

-0.595

1.241

BXD06

-0.386

2.098

BXD07

-0.612

0.809

BXD08

-0.322

1.227

BXD09

-0.34

2.005

CAST

-1.753

1.458

CCcont

2.317

4.277

DS01

-0.683

0.551

DS02

-1.498

0.35

DS04

-0.301

1.32

DS0c

0.996

0.652

GP01

0.562

0.36

GP02

-0.698

-0.159

GP0c

0.437

-0.248

NOD

-1.119

2.071

NZO

-1.114

1.357

PWK

0.136

0.715

H37Rv_KO_CtpC

-1.01

0.0

H37Rv_KO_CtpD

0.64

1.689

H37Rv_KO_Rv1272

1.458

0.753

H37Rv_KO_SugABC

-0.24

1.666

H37Rv_KO_MbtN

0.689

1.959

Trans05

-0.577

0.628

macrophage_unactivated

0.83

0.571

IL1

-1.797

-1.326

Rapamycin

-0.988

-0.307

Tcell

-3.125

0.303

GMCSF

0.314

-0.85

IFNab

1.097

0.795

IFNg

-1.97

-1.563

IFNg_GMCSF1

-1.904

-0.647

Rv1432_day32

-0.894

1.155

Rv1565c_day32

-0.235

-0.256

secA2_input

-0.384

-0.676

delta_Rv3594

0.145

4.577

delta_Rv3717

-0.76

4.406

delta_Rv3811

0.141

3.248

delta_Rv0954

1.268

0.969

PonA1

0.15

-0.245

EccD1_KO

-0.201

-1.542

EspI_KO

0.374

-1.879

PE35_KO

0.149

-0.548

PPE68_KO

0.266

-0.902

glycerol2

1.279

0.395

lignocerate

-1.777

-0.764

oleate

-0.924

-0.588

phosphatidylcholine

-0.913

-1.751

acetate

-0.095

1.536

glucAc

-0.423

2.08

Rv0950ko

0.024

0.862

Rv1096ko

-0.166

0.398

Rv3684ko

-0.763

0.829

delta_otsA_trehalose

-0.111

0.4