TnSeqCorr

Top 10 genes with highest correlation to Rv3433c/-:

update plotcorrelationlink to info on gene
Rv0038/- (cc=0.5783) info on Rv0038/-
Rv0407/fgd1 (cc=0.5711) info on Rv0407/fgd1
Rv3223c/sigH (cc=0.5645) info on Rv3223c/sigH
Rv1069c/- (cc=0.535) info on Rv1069c/-
Rv1638/uvrA (cc=0.519) info on Rv1638/uvrA
Rv1112/- (cc=0.4942) info on Rv1112/-
Rv3133c/devR (cc=0.4772) info on Rv3133c/devR
Rv3755c/- (cc=0.472) info on Rv3755c/-
Rv3068c/pgmA (cc=0.4632) info on Rv3068c/pgmA
Rv1408/rpe (cc=0.4629) info on Rv1408/rpe

Correlation of Rv3433c/- with Rv0407/fgd1

Normalized LFCs for Rv3433c/-:
(description and provenance of datasets)
Rv3433c/-Rv0407/fgd1
Fe_supp_jason_reseq

1.579

1.359

low_pH_jason_reseq

-1.367

-0.407

NO_jason_reseq

-2.945

-2.788

B6_jason_reseq

-1.446

-0.324

MHCII_jason_reseq

-0.497

-0.774

Isoniazid02

2.231

-0.064

Rifampicin4

1.083

0.19

Ethambutol3

0.672

0.992

Meropenem3

0.334

0.315

Vancomycin16

0.273

-0.279

Rv2680_day32

-0.375

-1.532

H37Rv_KO_MarP

0.945

0.073

hypoxia_3wks

-4.243

-3.102

hypoxia_6wks

-3.926

-3.504

glycerol

0.513

3.182

cholesterol

1.221

1.159

AJ

-0.086

-1.096

Bibs02

0.662

1.266

Bibs02c

0.411

1.852

BL6

-0.303

-0.867

BL6a

0.267

1.202

BXD01

-0.149

-0.903

BXD010

-0.566

0.189

BXD011

0.0

-0.734

BXD03

-0.525

0.341

BXD04

0.044

0.076

BXD05

-0.595

-0.508

BXD06

-0.386

0.946

BXD07

-0.612

-0.724

BXD08

-0.322

-0.696

BXD09

-0.34

-0.295

CAST

-1.753

-1.328

CCcont

2.317

2.621

DS01

-0.683

2.421

DS02

-1.498

1.119

DS04

-0.301

1.553

DS0c

0.996

2.373

GP01

0.562

-0.684

GP02

-0.698

0.25

GP0c

0.437

-1.493

NOD

-1.119

-0.303

NZO

-1.114

-1.263

PWK

0.136

-1.617

H37Rv_KO_CtpC

-1.01

0.24

H37Rv_KO_CtpD

0.64

1.014

H37Rv_KO_Rv1272

1.458

-0.532

H37Rv_KO_SugABC

-0.24

-0.329

H37Rv_KO_MbtN

0.689

1.297

Trans05

-0.577

-0.38

macrophage_unactivated

0.83

0.745

IL1

-1.797

-1.198

Rapamycin

-0.988

-0.098

Tcell

-3.125

0.205

GMCSF

0.314

-1.18

IFNab

1.097

-0.853

IFNg

-1.97

-1.195

IFNg_GMCSF1

-1.904

-1.69

Rv1432_day32

-0.894

-0.705

Rv1565c_day32

-0.235

1.238

secA2_input

-0.384

-0.127

delta_Rv3594

0.145

-0.194

delta_Rv3717

-0.76

-0.764

delta_Rv3811

0.141

-0.28

delta_Rv0954

1.268

0.966

PonA1

0.15

-0.038

EccD1_KO

-0.201

-0.056

EspI_KO

0.374

0.188

PE35_KO

0.149

0.356

PPE68_KO

0.266

0.416

glycerol2

1.279

0.024

lignocerate

-1.777

-0.408

oleate

-0.924

-2.127

phosphatidylcholine

-0.913

-1.041

acetate

-0.095

1.23

glucAc

-0.423

1.189

Rv0950ko

0.024

-0.296

Rv1096ko

-0.166

0.066

Rv3684ko

-0.763

0.521

delta_otsA_trehalose

-0.111

-0.046