Top 10 genes with highest correlation to Rv3874/esxB:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3883c/mycP1 | (cc=0.7939) | info on Rv3883c/mycP1 |
| Rv3882c/eccE1 | (cc=0.7877) | info on Rv3882c/eccE1 |
| Rv3871/eccCb1 | (cc=0.7759) | info on Rv3871/eccCb1 |
| Rv3870/eccCa1 | (cc=0.7726) | info on Rv3870/eccCa1 |
| Rv3869/eccB1 | (cc=0.7702) | info on Rv3869/eccB1 |
| Rv3873/PPE68 | (cc=0.7625) | info on Rv3873/PPE68 |
| Rv3551/- | (cc=0.728) | info on Rv3551/- |
| Rv3616c/espA | (cc=0.7254) | info on Rv3616c/espA |
| Rv3615c/espC | (cc=0.7145) | info on Rv3615c/espC |
| Rv3877/eccD1 | (cc=0.7139) | info on Rv3877/eccD1 |
Correlation of Rv3874/esxB with Rv3882c/eccE1
Normalized LFCs for Rv3874/esxB:
(description and provenance of datasets)
| Rv3874/esxB | Rv3882c/eccE1 | |
| Fe_supp_jason_reseq | 2.171 | -0.158 |
| low_pH_jason_reseq | 0.895 | -0.681 |
| NO_jason_reseq | 2.221 | -0.137 |
| B6_jason_reseq | -1.502 | -2.577 |
| MHCII_jason_reseq | -0.667 | -2.917 |
| Isoniazid02 | -0.348 | -0.441 |
| Rifampicin4 | -0.847 | -0.758 |
| Ethambutol3 | -0.075 | 0.265 |
| Meropenem3 | 0.043 | 0.539 |
| Vancomycin16 | -0.634 | 0.098 |
| Rv2680_day32 | -1.662 | -3.186 |
| H37Rv_KO_MarP | -0.052 | 1.198 |
| hypoxia_3wks | 1.073 | -0.439 |
| hypoxia_6wks | 1.09 | -0.052 |
| glycerol | 0.162 | 0.015 |
| cholesterol | 0.033 | -0.207 |
| AJ | -4.809 | -5.849 |
| Bibs02 | -5.016 | -6.0 |
| Bibs02c | -3.265 | -5.218 |
| BL6 | -2.901 | -2.18 |
| BL6a | -3.801 | -4.305 |
| BXD01 | -2.221 | -3.18 |
| BXD010 | -3.513 | -2.232 |
| BXD011 | -2.712 | -2.846 |
| BXD03 | -3.452 | -2.565 |
| BXD04 | -2.497 | -1.792 |
| BXD05 | -2.1 | -3.285 |
| BXD06 | -3.096 | -3.16 |
| BXD07 | -3.535 | -3.123 |
| BXD08 | -3.649 | -3.282 |
| BXD09 | -3.587 | -3.543 |
| CAST | -5.342 | -4.96 |
| CCcont | -0.34 | -0.15 |
| DS01 | -3.119 | -3.826 |
| DS02 | -1.747 | -4.684 |
| DS04 | -3.384 | -3.187 |
| DS0c | -4.885 | -4.084 |
| GP01 | -2.438 | -2.963 |
| GP02 | -2.283 | -2.747 |
| GP0c | -1.553 | -0.702 |
| NOD | -4.107 | -2.146 |
| NZO | -5.092 | -4.82 |
| PWK | -4.691 | -5.363 |
| H37Rv_KO_CtpC | -1.903 | -1.31 |
| H37Rv_KO_CtpD | 0.458 | -1.751 |
| H37Rv_KO_Rv1272 | -1.826 | -3.306 |
| H37Rv_KO_SugABC | -0.313 | -0.318 |
| H37Rv_KO_MbtN | -1.541 | 0.692 |
| Trans05 | -1.797 | -2.028 |
| macrophage_unactivated | -2.456 | -0.893 |
| IL1 | -2.308 | -0.344 |
| Rapamycin | 0.353 | -0.301 |
| Tcell | -2.792 | -2.017 |
| GMCSF | -1.486 | 0.325 |
| IFNab | 0.133 | 1.735 |
| IFNg | -1.446 | -1.748 |
| IFNg_GMCSF1 | -2.13 | -1.386 |
| Rv1432_day32 | -2.542 | -2.744 |
| Rv1565c_day32 | -2.402 | -3.434 |
| secA2_input | 0.407 | -0.357 |
| delta_Rv3594 | -0.84 | -0.121 |
| delta_Rv3717 | -0.651 | -0.067 |
| delta_Rv3811 | -0.816 | -0.074 |
| delta_Rv0954 | -0.499 | -0.023 |
| PonA1 | -2.116 | -0.279 |
| EccD1_KO | -0.533 | -0.217 |
| EspI_KO | -2.564 | -0.89 |
| PE35_KO | -1.861 | -0.633 |
| PPE68_KO | -1.939 | -0.448 |
| glycerol2 | 1.304 | 0.754 |
| lignocerate | 2.087 | 0.869 |
| oleate | -1.418 | 0.679 |
| phosphatidylcholine | 1.611 | 0.343 |
| acetate | 2.635 | -0.126 |
| glucAc | 2.324 | 0.187 |
| Rv0950ko | 0.398 | 0.416 |
| Rv1096ko | 0.736 | -0.431 |
| Rv3684ko | 0.291 | -0.576 |
| delta_otsA_trehalose | -0.079 | -1.389 |