Top 10 genes with highest correlation to Rv3874/esxB:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3883c/mycP1 | (cc=0.7939) | info on Rv3883c/mycP1 |
| Rv3882c/eccE1 | (cc=0.7877) | info on Rv3882c/eccE1 |
| Rv3871/eccCb1 | (cc=0.7759) | info on Rv3871/eccCb1 |
| Rv3870/eccCa1 | (cc=0.7726) | info on Rv3870/eccCa1 |
| Rv3869/eccB1 | (cc=0.7702) | info on Rv3869/eccB1 |
| Rv3873/PPE68 | (cc=0.7625) | info on Rv3873/PPE68 |
| Rv3551/- | (cc=0.728) | info on Rv3551/- |
| Rv3616c/espA | (cc=0.7254) | info on Rv3616c/espA |
| Rv3615c/espC | (cc=0.7145) | info on Rv3615c/espC |
| Rv3877/eccD1 | (cc=0.7139) | info on Rv3877/eccD1 |
Correlation of Rv3874/esxB with Rv3877/eccD1
Normalized LFCs for Rv3874/esxB:
(description and provenance of datasets)
| Rv3874/esxB | Rv3877/eccD1 | |
| Fe_supp_jason_reseq | 2.171 | 0.163 |
| low_pH_jason_reseq | 0.895 | -0.765 |
| NO_jason_reseq | 2.221 | -0.394 |
| B6_jason_reseq | -1.502 | -1.882 |
| MHCII_jason_reseq | -0.667 | -2.474 |
| Isoniazid02 | -0.348 | -1.077 |
| Rifampicin4 | -0.847 | -0.374 |
| Ethambutol3 | -0.075 | -0.709 |
| Meropenem3 | 0.043 | -0.231 |
| Vancomycin16 | -0.634 | -0.326 |
| Rv2680_day32 | -1.662 | -1.79 |
| H37Rv_KO_MarP | -0.052 | 1.308 |
| hypoxia_3wks | 1.073 | -0.494 |
| hypoxia_6wks | 1.09 | -0.203 |
| glycerol | 0.162 | -0.592 |
| cholesterol | 0.033 | 0.518 |
| AJ | -4.809 | -5.531 |
| Bibs02 | -5.016 | -5.865 |
| Bibs02c | -3.265 | -5.055 |
| BL6 | -2.901 | -2.388 |
| BL6a | -3.801 | -5.216 |
| BXD01 | -2.221 | -3.065 |
| BXD010 | -3.513 | -2.086 |
| BXD011 | -2.712 | -3.163 |
| BXD03 | -3.452 | -2.609 |
| BXD04 | -2.497 | -2.491 |
| BXD05 | -2.1 | -2.773 |
| BXD06 | -3.096 | -3.269 |
| BXD07 | -3.535 | -3.175 |
| BXD08 | -3.649 | -3.012 |
| BXD09 | -3.587 | -4.014 |
| CAST | -5.342 | -4.306 |
| CCcont | -0.34 | -0.524 |
| DS01 | -3.119 | -3.384 |
| DS02 | -1.747 | -4.43 |
| DS04 | -3.384 | -1.502 |
| DS0c | -4.885 | -5.627 |
| GP01 | -2.438 | -1.989 |
| GP02 | -2.283 | -2.669 |
| GP0c | -1.553 | -0.818 |
| NOD | -4.107 | -1.816 |
| NZO | -5.092 | -5.252 |
| PWK | -4.691 | -4.615 |
| H37Rv_KO_CtpC | -1.903 | -1.667 |
| H37Rv_KO_CtpD | 0.458 | -1.344 |
| H37Rv_KO_Rv1272 | -1.826 | -2.637 |
| H37Rv_KO_SugABC | -0.313 | -0.844 |
| H37Rv_KO_MbtN | -1.541 | 1.484 |
| Trans05 | -1.797 | -2.049 |
| macrophage_unactivated | -2.456 | -0.707 |
| IL1 | -2.308 | -0.03 |
| Rapamycin | 0.353 | 0.236 |
| Tcell | -2.792 | -1.685 |
| GMCSF | -1.486 | 0.227 |
| IFNab | 0.133 | 1.729 |
| IFNg | -1.446 | -0.853 |
| IFNg_GMCSF1 | -2.13 | -0.742 |
| Rv1432_day32 | -2.542 | -2.764 |
| Rv1565c_day32 | -2.402 | -3.428 |
| secA2_input | 0.407 | -0.715 |
| delta_Rv3594 | -0.84 | -0.112 |
| delta_Rv3717 | -0.651 | -0.234 |
| delta_Rv3811 | -0.816 | 0.149 |
| delta_Rv0954 | -0.499 | -0.059 |
| PonA1 | -2.116 | -0.452 |
| EccD1_KO | -0.533 | -6.0 |
| EspI_KO | -2.564 | 0.682 |
| PE35_KO | -1.861 | 0.878 |
| PPE68_KO | -1.939 | 0.726 |
| glycerol2 | 1.304 | 0.388 |
| lignocerate | 2.087 | 0.901 |
| oleate | -1.418 | 0.089 |
| phosphatidylcholine | 1.611 | 0.422 |
| acetate | 2.635 | 0.066 |
| glucAc | 2.324 | 0.041 |
| Rv0950ko | 0.398 | 0.519 |
| Rv1096ko | 0.736 | 0.112 |
| Rv3684ko | 0.291 | 0.406 |
| delta_otsA_trehalose | -0.079 | -0.191 |