Top 10 genes with highest correlation to Rv3874/esxB:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3883c/mycP1 | (cc=0.7939) | info on Rv3883c/mycP1 |
| Rv3882c/eccE1 | (cc=0.7877) | info on Rv3882c/eccE1 |
| Rv3871/eccCb1 | (cc=0.7759) | info on Rv3871/eccCb1 |
| Rv3870/eccCa1 | (cc=0.7726) | info on Rv3870/eccCa1 |
| Rv3869/eccB1 | (cc=0.7702) | info on Rv3869/eccB1 |
| Rv3873/PPE68 | (cc=0.7625) | info on Rv3873/PPE68 |
| Rv3551/- | (cc=0.728) | info on Rv3551/- |
| Rv3616c/espA | (cc=0.7254) | info on Rv3616c/espA |
| Rv3615c/espC | (cc=0.7145) | info on Rv3615c/espC |
| Rv3877/eccD1 | (cc=0.7139) | info on Rv3877/eccD1 |
Correlation of Rv3874/esxB with Rv3551/-
Normalized LFCs for Rv3874/esxB:
(description and provenance of datasets)
| Rv3874/esxB | Rv3551/- | |
| Fe_supp_jason_reseq | 2.171 | 0.737 |
| low_pH_jason_reseq | 0.895 | -0.647 |
| NO_jason_reseq | 2.221 | -0.601 |
| B6_jason_reseq | -1.502 | -1.96 |
| MHCII_jason_reseq | -0.667 | -1.726 |
| Isoniazid02 | -0.348 | -0.842 |
| Rifampicin4 | -0.847 | -0.165 |
| Ethambutol3 | -0.075 | -1.515 |
| Meropenem3 | 0.043 | 0.734 |
| Vancomycin16 | -0.634 | -1.008 |
| Rv2680_day32 | -1.662 | -1.788 |
| H37Rv_KO_MarP | -0.052 | 0.246 |
| hypoxia_3wks | 1.073 | 0.08 |
| hypoxia_6wks | 1.09 | -0.693 |
| glycerol | 0.162 | 1.148 |
| cholesterol | 0.033 | -3.657 |
| AJ | -4.809 | -5.857 |
| Bibs02 | -5.016 | -4.616 |
| Bibs02c | -3.265 | -5.282 |
| BL6 | -2.901 | -2.92 |
| BL6a | -3.801 | -5.001 |
| BXD01 | -2.221 | -3.288 |
| BXD010 | -3.513 | -2.306 |
| BXD011 | -2.712 | -2.59 |
| BXD03 | -3.452 | -3.28 |
| BXD04 | -2.497 | -2.999 |
| BXD05 | -2.1 | -3.029 |
| BXD06 | -3.096 | -3.37 |
| BXD07 | -3.535 | -3.496 |
| BXD08 | -3.649 | -3.226 |
| BXD09 | -3.587 | -3.408 |
| CAST | -5.342 | -4.838 |
| CCcont | -0.34 | -0.733 |
| DS01 | -3.119 | -5.963 |
| DS02 | -1.747 | -5.49 |
| DS04 | -3.384 | -4.367 |
| DS0c | -4.885 | -5.476 |
| GP01 | -2.438 | -2.304 |
| GP02 | -2.283 | -1.942 |
| GP0c | -1.553 | -1.016 |
| NOD | -4.107 | -1.847 |
| NZO | -5.092 | -4.838 |
| PWK | -4.691 | -4.757 |
| H37Rv_KO_CtpC | -1.903 | -3.94 |
| H37Rv_KO_CtpD | 0.458 | -2.576 |
| H37Rv_KO_Rv1272 | -1.826 | -3.56 |
| H37Rv_KO_SugABC | -0.313 | -1.783 |
| H37Rv_KO_MbtN | -1.541 | -1.855 |
| Trans05 | -1.797 | -3.299 |
| macrophage_unactivated | -2.456 | 0.66 |
| IL1 | -2.308 | -1.605 |
| Rapamycin | 0.353 | -1.093 |
| Tcell | -2.792 | -2.209 |
| GMCSF | -1.486 | 0.752 |
| IFNab | 0.133 | 2.283 |
| IFNg | -1.446 | -0.249 |
| IFNg_GMCSF1 | -2.13 | -0.606 |
| Rv1432_day32 | -2.542 | -3.863 |
| Rv1565c_day32 | -2.402 | -3.884 |
| secA2_input | 0.407 | -0.54 |
| delta_Rv3594 | -0.84 | -0.26 |
| delta_Rv3717 | -0.651 | 0.191 |
| delta_Rv3811 | -0.816 | 0.556 |
| delta_Rv0954 | -0.499 | 1.149 |
| PonA1 | -2.116 | 0.384 |
| EccD1_KO | -0.533 | 1.246 |
| EspI_KO | -2.564 | 0.539 |
| PE35_KO | -1.861 | 1.105 |
| PPE68_KO | -1.939 | 1.139 |
| glycerol2 | 1.304 | 0.289 |
| lignocerate | 2.087 | 0.785 |
| oleate | -1.418 | -0.537 |
| phosphatidylcholine | 1.611 | -0.106 |
| acetate | 2.635 | 2.234 |
| glucAc | 2.324 | 1.052 |
| Rv0950ko | 0.398 | 1.903 |
| Rv1096ko | 0.736 | 0.329 |
| Rv3684ko | 0.291 | 0.092 |
| delta_otsA_trehalose | -0.079 | 0.325 |