Top 10 genes with highest correlation to Rv3877/eccD1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3882c/eccE1 | (cc=0.8893) | info on Rv3882c/eccE1 |
| Rv3870/eccCa1 | (cc=0.8864) | info on Rv3870/eccCa1 |
| Rv3871/eccCb1 | (cc=0.8746) | info on Rv3871/eccCb1 |
| Rv3883c/mycP1 | (cc=0.8685) | info on Rv3883c/mycP1 |
| Rv3869/eccB1 | (cc=0.8684) | info on Rv3869/eccB1 |
| Rv3616c/espA | (cc=0.838) | info on Rv3616c/espA |
| Rv3615c/espC | (cc=0.8359) | info on Rv3615c/espC |
| Rv3614c/espD | (cc=0.8357) | info on Rv3614c/espD |
| Rv3544c/fadE28 | (cc=0.7967) | info on Rv3544c/fadE28 |
| Rv1590/- | (cc=0.7959) | info on Rv1590/- |
Correlation of Rv3877/eccD1 with Rv3869/eccB1
Normalized LFCs for Rv3877/eccD1:
(description and provenance of datasets)
| Rv3877/eccD1 | Rv3869/eccB1 | |
| Fe_supp_jason_reseq | 0.163 | -0.595 |
| low_pH_jason_reseq | -0.765 | -1.504 |
| NO_jason_reseq | -0.394 | -0.517 |
| B6_jason_reseq | -1.882 | -3.095 |
| MHCII_jason_reseq | -2.474 | -3.051 |
| Isoniazid02 | -1.077 | 0.301 |
| Rifampicin4 | -0.374 | -0.379 |
| Ethambutol3 | -0.709 | 2.148 |
| Meropenem3 | -0.231 | 1.319 |
| Vancomycin16 | -0.326 | 0.231 |
| Rv2680_day32 | -1.79 | -2.152 |
| H37Rv_KO_MarP | 1.308 | 1.091 |
| hypoxia_3wks | -0.494 | -0.14 |
| hypoxia_6wks | -0.203 | -0.276 |
| glycerol | -0.592 | -0.376 |
| cholesterol | 0.518 | 0.317 |
| AJ | -5.531 | -5.94 |
| Bibs02 | -5.865 | -6.0 |
| Bibs02c | -5.055 | -3.504 |
| BL6 | -2.388 | -2.513 |
| BL6a | -5.216 | -3.579 |
| BXD01 | -3.065 | -3.629 |
| BXD010 | -2.086 | -3.073 |
| BXD011 | -3.163 | -3.299 |
| BXD03 | -2.609 | -3.502 |
| BXD04 | -2.491 | -2.55 |
| BXD05 | -2.773 | -3.799 |
| BXD06 | -3.269 | -3.819 |
| BXD07 | -3.175 | -3.254 |
| BXD08 | -3.012 | -3.805 |
| BXD09 | -4.014 | -4.193 |
| CAST | -4.306 | -4.92 |
| CCcont | -0.524 | -1.079 |
| DS01 | -3.384 | -4.336 |
| DS02 | -4.43 | -3.929 |
| DS04 | -1.502 | -2.034 |
| DS0c | -5.627 | -4.552 |
| GP01 | -1.989 | -2.946 |
| GP02 | -2.669 | -2.891 |
| GP0c | -0.818 | -1.04 |
| NOD | -1.816 | -1.808 |
| NZO | -5.252 | -5.557 |
| PWK | -4.615 | -5.201 |
| H37Rv_KO_CtpC | -1.667 | -1.915 |
| H37Rv_KO_CtpD | -1.344 | -1.944 |
| H37Rv_KO_Rv1272 | -2.637 | -2.651 |
| H37Rv_KO_SugABC | -0.844 | -0.819 |
| H37Rv_KO_MbtN | 1.484 | 0.476 |
| Trans05 | -2.049 | -1.832 |
| macrophage_unactivated | -0.707 | -0.978 |
| IL1 | -0.03 | -0.169 |
| Rapamycin | 0.236 | 0.249 |
| Tcell | -1.685 | -1.571 |
| GMCSF | 0.227 | 0.504 |
| IFNab | 1.729 | 1.835 |
| IFNg | -0.853 | -1.358 |
| IFNg_GMCSF1 | -0.742 | -1.012 |
| Rv1432_day32 | -2.764 | -1.288 |
| Rv1565c_day32 | -3.428 | -2.783 |
| secA2_input | -0.715 | 0.412 |
| delta_Rv3594 | -0.112 | 0.451 |
| delta_Rv3717 | -0.234 | -0.084 |
| delta_Rv3811 | 0.149 | 0.256 |
| delta_Rv0954 | -0.059 | 0.464 |
| PonA1 | -0.452 | -0.225 |
| EccD1_KO | -6.0 | 0.125 |
| EspI_KO | 0.682 | -0.046 |
| PE35_KO | 0.878 | -0.015 |
| PPE68_KO | 0.726 | -0.253 |
| glycerol2 | 0.388 | 0.156 |
| lignocerate | 0.901 | 0.488 |
| oleate | 0.089 | -0.071 |
| phosphatidylcholine | 0.422 | 0.49 |
| acetate | 0.066 | 0.401 |
| glucAc | 0.041 | 0.092 |
| Rv0950ko | 0.519 | 0.193 |
| Rv1096ko | 0.112 | -0.283 |
| Rv3684ko | 0.406 | 0.635 |
| delta_otsA_trehalose | -0.191 | -0.181 |