Top 10 genes with highest correlation to Rv3877/eccD1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3882c/eccE1 | (cc=0.8893) | info on Rv3882c/eccE1 |
| Rv3870/eccCa1 | (cc=0.8864) | info on Rv3870/eccCa1 |
| Rv3871/eccCb1 | (cc=0.8746) | info on Rv3871/eccCb1 |
| Rv3883c/mycP1 | (cc=0.8685) | info on Rv3883c/mycP1 |
| Rv3869/eccB1 | (cc=0.8684) | info on Rv3869/eccB1 |
| Rv3616c/espA | (cc=0.838) | info on Rv3616c/espA |
| Rv3615c/espC | (cc=0.8359) | info on Rv3615c/espC |
| Rv3614c/espD | (cc=0.8357) | info on Rv3614c/espD |
| Rv3544c/fadE28 | (cc=0.7967) | info on Rv3544c/fadE28 |
| Rv1590/- | (cc=0.7959) | info on Rv1590/- |
Correlation of Rv3877/eccD1 with Rv3614c/espD
Normalized LFCs for Rv3877/eccD1:
(description and provenance of datasets)
| Rv3877/eccD1 | Rv3614c/espD | |
| Fe_supp_jason_reseq | 0.163 | -0.587 |
| low_pH_jason_reseq | -0.765 | -0.668 |
| NO_jason_reseq | -0.394 | -0.795 |
| B6_jason_reseq | -1.882 | -2.337 |
| MHCII_jason_reseq | -2.474 | -2.243 |
| Isoniazid02 | -1.077 | 0.007 |
| Rifampicin4 | -0.374 | -0.187 |
| Ethambutol3 | -0.709 | 0.499 |
| Meropenem3 | -0.231 | 0.052 |
| Vancomycin16 | -0.326 | 0.013 |
| Rv2680_day32 | -1.79 | -1.55 |
| H37Rv_KO_MarP | 1.308 | 1.281 |
| hypoxia_3wks | -0.494 | -0.159 |
| hypoxia_6wks | -0.203 | -1.084 |
| glycerol | -0.592 | -1.3 |
| cholesterol | 0.518 | -0.729 |
| AJ | -5.531 | -5.192 |
| Bibs02 | -5.865 | -5.457 |
| Bibs02c | -5.055 | -4.547 |
| BL6 | -2.388 | -1.299 |
| BL6a | -5.216 | -4.873 |
| BXD01 | -3.065 | -2.886 |
| BXD010 | -2.086 | -2.241 |
| BXD011 | -3.163 | -2.548 |
| BXD03 | -2.609 | -2.31 |
| BXD04 | -2.491 | -2.767 |
| BXD05 | -2.773 | -1.613 |
| BXD06 | -3.269 | -2.794 |
| BXD07 | -3.175 | -2.523 |
| BXD08 | -3.012 | -3.347 |
| BXD09 | -4.014 | -3.276 |
| CAST | -4.306 | -3.997 |
| CCcont | -0.524 | -0.378 |
| DS01 | -3.384 | -6.0 |
| DS02 | -4.43 | -6.0 |
| DS04 | -1.502 | -3.847 |
| DS0c | -5.627 | -5.276 |
| GP01 | -1.989 | -1.875 |
| GP02 | -2.669 | -2.344 |
| GP0c | -0.818 | -1.179 |
| NOD | -1.816 | 0.153 |
| NZO | -5.252 | -6.0 |
| PWK | -4.615 | -4.825 |
| H37Rv_KO_CtpC | -1.667 | -1.587 |
| H37Rv_KO_CtpD | -1.344 | -1.102 |
| H37Rv_KO_Rv1272 | -2.637 | -1.097 |
| H37Rv_KO_SugABC | -0.844 | -2.464 |
| H37Rv_KO_MbtN | 1.484 | 0.817 |
| Trans05 | -2.049 | -0.72 |
| macrophage_unactivated | -0.707 | -0.218 |
| IL1 | -0.03 | -0.148 |
| Rapamycin | 0.236 | -0.672 |
| Tcell | -1.685 | -1.235 |
| GMCSF | 0.227 | 0.016 |
| IFNab | 1.729 | 1.128 |
| IFNg | -0.853 | -1.098 |
| IFNg_GMCSF1 | -0.742 | 0.682 |
| Rv1432_day32 | -2.764 | -1.13 |
| Rv1565c_day32 | -3.428 | -3.097 |
| secA2_input | -0.715 | -0.873 |
| delta_Rv3594 | -0.112 | 0.242 |
| delta_Rv3717 | -0.234 | -0.596 |
| delta_Rv3811 | 0.149 | -0.433 |
| delta_Rv0954 | -0.059 | -0.437 |
| PonA1 | -0.452 | -1.641 |
| EccD1_KO | -6.0 | 0.572 |
| EspI_KO | 0.682 | 1.514 |
| PE35_KO | 0.878 | 1.082 |
| PPE68_KO | 0.726 | 1.222 |
| glycerol2 | 0.388 | 1.184 |
| lignocerate | 0.901 | 0.6 |
| oleate | 0.089 | 1.136 |
| phosphatidylcholine | 0.422 | 0.262 |
| acetate | 0.066 | -0.153 |
| glucAc | 0.041 | -0.228 |
| Rv0950ko | 0.519 | 0.485 |
| Rv1096ko | 0.112 | -0.6 |
| Rv3684ko | 0.406 | -0.766 |
| delta_otsA_trehalose | -0.191 | 0.89 |