Top 10 genes with highest correlation to Rv3877/eccD1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3882c/eccE1 | (cc=0.8893) | info on Rv3882c/eccE1 |
| Rv3870/eccCa1 | (cc=0.8864) | info on Rv3870/eccCa1 |
| Rv3871/eccCb1 | (cc=0.8746) | info on Rv3871/eccCb1 |
| Rv3883c/mycP1 | (cc=0.8685) | info on Rv3883c/mycP1 |
| Rv3869/eccB1 | (cc=0.8684) | info on Rv3869/eccB1 |
| Rv3616c/espA | (cc=0.838) | info on Rv3616c/espA |
| Rv3615c/espC | (cc=0.8359) | info on Rv3615c/espC |
| Rv3614c/espD | (cc=0.8357) | info on Rv3614c/espD |
| Rv3544c/fadE28 | (cc=0.7967) | info on Rv3544c/fadE28 |
| Rv1590/- | (cc=0.7959) | info on Rv1590/- |
Correlation of Rv3877/eccD1 with Rv1590/-
Normalized LFCs for Rv3877/eccD1:
(description and provenance of datasets)
| Rv3877/eccD1 | Rv1590/- | |
| Fe_supp_jason_reseq | 0.163 | 1.809 |
| low_pH_jason_reseq | -0.765 | -2.058 |
| NO_jason_reseq | -0.394 | -0.391 |
| B6_jason_reseq | -1.882 | -5.114 |
| MHCII_jason_reseq | -2.474 | -4.029 |
| Isoniazid02 | -1.077 | -0.288 |
| Rifampicin4 | -0.374 | -0.273 |
| Ethambutol3 | -0.709 | 0.114 |
| Meropenem3 | -0.231 | 0.156 |
| Vancomycin16 | -0.326 | 0.462 |
| Rv2680_day32 | -1.79 | -4.076 |
| H37Rv_KO_MarP | 1.308 | -0.391 |
| hypoxia_3wks | -0.494 | 0.598 |
| hypoxia_6wks | -0.203 | -0.18 |
| glycerol | -0.592 | -6.0 |
| cholesterol | 0.518 | -4.706 |
| AJ | -5.531 | -6.0 |
| Bibs02 | -5.865 | -5.941 |
| Bibs02c | -5.055 | -6.0 |
| BL6 | -2.388 | -3.094 |
| BL6a | -5.216 | -5.463 |
| BXD01 | -3.065 | -3.774 |
| BXD010 | -2.086 | -4.161 |
| BXD011 | -3.163 | -3.691 |
| BXD03 | -2.609 | -4.393 |
| BXD04 | -2.491 | -4.018 |
| BXD05 | -2.773 | -3.329 |
| BXD06 | -3.269 | -4.337 |
| BXD07 | -3.175 | -4.499 |
| BXD08 | -3.012 | -4.321 |
| BXD09 | -4.014 | -4.566 |
| CAST | -4.306 | -5.586 |
| CCcont | -0.524 | 0.202 |
| DS01 | -3.384 | -6.0 |
| DS02 | -4.43 | -6.0 |
| DS04 | -1.502 | -3.596 |
| DS0c | -5.627 | -6.0 |
| GP01 | -1.989 | -2.937 |
| GP02 | -2.669 | -2.475 |
| GP0c | -0.818 | -1.317 |
| NOD | -1.816 | -4.357 |
| NZO | -5.252 | -6.0 |
| PWK | -4.615 | -5.836 |
| H37Rv_KO_CtpC | -1.667 | -4.101 |
| H37Rv_KO_CtpD | -1.344 | -1.658 |
| H37Rv_KO_Rv1272 | -2.637 | -4.196 |
| H37Rv_KO_SugABC | -0.844 | -1.708 |
| H37Rv_KO_MbtN | 1.484 | 0.152 |
| Trans05 | -2.049 | -3.603 |
| macrophage_unactivated | -0.707 | 0.145 |
| IL1 | -0.03 | -0.442 |
| Rapamycin | 0.236 | 2.243 |
| Tcell | -1.685 | 0.241 |
| GMCSF | 0.227 | 0.723 |
| IFNab | 1.729 | 1.36 |
| IFNg | -0.853 | -0.657 |
| IFNg_GMCSF1 | -0.742 | -2.209 |
| Rv1432_day32 | -2.764 | -6.0 |
| Rv1565c_day32 | -3.428 | -6.0 |
| secA2_input | -0.715 | -0.088 |
| delta_Rv3594 | -0.112 | 1.781 |
| delta_Rv3717 | -0.234 | 1.747 |
| delta_Rv3811 | 0.149 | 0.921 |
| delta_Rv0954 | -0.059 | 0.376 |
| PonA1 | -0.452 | 1.032 |
| EccD1_KO | -6.0 | -1.312 |
| EspI_KO | 0.682 | -0.556 |
| PE35_KO | 0.878 | -0.621 |
| PPE68_KO | 0.726 | -1.145 |
| glycerol2 | 0.388 | 0.0 |
| lignocerate | 0.901 | 0.168 |
| oleate | 0.089 | 0.0 |
| phosphatidylcholine | 0.422 | 0.0 |
| acetate | 0.066 | 0.0 |
| glucAc | 0.041 | 1.034 |
| Rv0950ko | 0.519 | -0.651 |
| Rv1096ko | 0.112 | 1.113 |
| Rv3684ko | 0.406 | -0.17 |
| delta_otsA_trehalose | -0.191 | 1.762 |