Top 10 genes with highest correlation to Rv3877/eccD1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3882c/eccE1 | (cc=0.8893) | info on Rv3882c/eccE1 |
| Rv3870/eccCa1 | (cc=0.8864) | info on Rv3870/eccCa1 |
| Rv3871/eccCb1 | (cc=0.8746) | info on Rv3871/eccCb1 |
| Rv3883c/mycP1 | (cc=0.8685) | info on Rv3883c/mycP1 |
| Rv3869/eccB1 | (cc=0.8684) | info on Rv3869/eccB1 |
| Rv3616c/espA | (cc=0.838) | info on Rv3616c/espA |
| Rv3615c/espC | (cc=0.8359) | info on Rv3615c/espC |
| Rv3614c/espD | (cc=0.8357) | info on Rv3614c/espD |
| Rv3544c/fadE28 | (cc=0.7967) | info on Rv3544c/fadE28 |
| Rv1590/- | (cc=0.7959) | info on Rv1590/- |
Correlation of Rv3877/eccD1 with Rv3615c/espC
Normalized LFCs for Rv3877/eccD1:
(description and provenance of datasets)
| Rv3877/eccD1 | Rv3615c/espC | |
| Fe_supp_jason_reseq | 0.163 | -0.076 |
| low_pH_jason_reseq | -0.765 | -0.791 |
| NO_jason_reseq | -0.394 | -0.179 |
| B6_jason_reseq | -1.882 | -2.738 |
| MHCII_jason_reseq | -2.474 | -3.219 |
| Isoniazid02 | -1.077 | -1.534 |
| Rifampicin4 | -0.374 | 0.663 |
| Ethambutol3 | -0.709 | 0.61 |
| Meropenem3 | -0.231 | -0.927 |
| Vancomycin16 | -0.326 | -0.438 |
| Rv2680_day32 | -1.79 | -2.287 |
| H37Rv_KO_MarP | 1.308 | 0.763 |
| hypoxia_3wks | -0.494 | -0.642 |
| hypoxia_6wks | -0.203 | -0.453 |
| glycerol | -0.592 | -1.542 |
| cholesterol | 0.518 | -2.127 |
| AJ | -5.531 | -4.615 |
| Bibs02 | -5.865 | -6.0 |
| Bibs02c | -5.055 | -5.515 |
| BL6 | -2.388 | -1.925 |
| BL6a | -5.216 | -4.038 |
| BXD01 | -3.065 | -2.432 |
| BXD010 | -2.086 | -1.317 |
| BXD011 | -3.163 | -2.379 |
| BXD03 | -2.609 | -2.734 |
| BXD04 | -2.491 | -1.094 |
| BXD05 | -2.773 | -2.385 |
| BXD06 | -3.269 | -3.264 |
| BXD07 | -3.175 | -2.435 |
| BXD08 | -3.012 | -3.429 |
| BXD09 | -4.014 | -3.21 |
| CAST | -4.306 | -4.656 |
| CCcont | -0.524 | 0.08 |
| DS01 | -3.384 | -5.297 |
| DS02 | -4.43 | -6.0 |
| DS04 | -1.502 | -3.797 |
| DS0c | -5.627 | -6.0 |
| GP01 | -1.989 | -1.918 |
| GP02 | -2.669 | -2.771 |
| GP0c | -0.818 | -0.687 |
| NOD | -1.816 | -0.556 |
| NZO | -5.252 | -4.599 |
| PWK | -4.615 | -5.419 |
| H37Rv_KO_CtpC | -1.667 | -1.589 |
| H37Rv_KO_CtpD | -1.344 | -0.43 |
| H37Rv_KO_Rv1272 | -2.637 | -1.432 |
| H37Rv_KO_SugABC | -0.844 | -1.494 |
| H37Rv_KO_MbtN | 1.484 | 0.721 |
| Trans05 | -2.049 | -1.485 |
| macrophage_unactivated | -0.707 | -1.203 |
| IL1 | -0.03 | -0.303 |
| Rapamycin | 0.236 | -0.761 |
| Tcell | -1.685 | -2.278 |
| GMCSF | 0.227 | 0.887 |
| IFNab | 1.729 | 0.629 |
| IFNg | -0.853 | -1.924 |
| IFNg_GMCSF1 | -0.742 | -1.304 |
| Rv1432_day32 | -2.764 | -2.181 |
| Rv1565c_day32 | -3.428 | -3.023 |
| secA2_input | -0.715 | 0.844 |
| delta_Rv3594 | -0.112 | 0.45 |
| delta_Rv3717 | -0.234 | -0.276 |
| delta_Rv3811 | 0.149 | -0.611 |
| delta_Rv0954 | -0.059 | 0.062 |
| PonA1 | -0.452 | -1.032 |
| EccD1_KO | -6.0 | -0.247 |
| EspI_KO | 0.682 | -0.639 |
| PE35_KO | 0.878 | -0.096 |
| PPE68_KO | 0.726 | -0.403 |
| glycerol2 | 0.388 | 0.556 |
| lignocerate | 0.901 | 0.544 |
| oleate | 0.089 | -0.103 |
| phosphatidylcholine | 0.422 | -0.066 |
| acetate | 0.066 | -0.146 |
| glucAc | 0.041 | -0.122 |
| Rv0950ko | 0.519 | -0.256 |
| Rv1096ko | 0.112 | -1.122 |
| Rv3684ko | 0.406 | -0.668 |
| delta_otsA_trehalose | -0.191 | 1.448 |