Top 10 genes with highest correlation to Rv3827c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0764c/cyp51 | (cc=0.4964) | info on Rv0764c/cyp51 |
| Rv3328c/sigJ | (cc=0.4959) | info on Rv3328c/sigJ |
| Rv1221/sigE | (cc=0.4885) | info on Rv1221/sigE |
| Rv1036c/- | (cc=0.4717) | info on Rv1036c/- |
| Rv3038c/- | (cc=0.4559) | info on Rv3038c/- |
| Rv2741/PE_PGRS47 | (cc=0.4553) | info on Rv2741/PE_PGRS47 |
| Rv1953/vapC14 | (cc=0.4423) | info on Rv1953/vapC14 |
| Rv1916/aceAb | (cc=0.442) | info on Rv1916/aceAb |
| Rv1453/- | (cc=0.4415) | info on Rv1453/- |
| Rv3453/- | (cc=0.4361) | info on Rv3453/- |
Correlation of Rv3827c/- with Rv3328c/sigJ
Normalized LFCs for Rv3827c/-:
(description and provenance of datasets)
| Rv3827c/- | Rv3328c/sigJ | |
| Fe_supp_jason_reseq | 0.074 | 1.721 |
| low_pH_jason_reseq | -0.489 | -2.098 |
| NO_jason_reseq | 0.063 | -0.189 |
| B6_jason_reseq | 0.078 | 1.393 |
| MHCII_jason_reseq | 0.155 | 1.706 |
| Isoniazid02 | -0.102 | -0.495 |
| Rifampicin4 | 0.403 | 0.079 |
| Ethambutol3 | -0.085 | -0.528 |
| Meropenem3 | 0.379 | -0.343 |
| Vancomycin16 | 0.464 | -0.077 |
| Rv2680_day32 | -0.041 | -0.136 |
| H37Rv_KO_MarP | 0.487 | -0.106 |
| hypoxia_3wks | 0.04 | -0.614 |
| hypoxia_6wks | 0.04 | -1.662 |
| glycerol | 0.18 | 0.468 |
| cholesterol | 0.194 | 0.0 |
| AJ | -0.227 | -0.049 |
| Bibs02 | -0.046 | 0.0 |
| Bibs02c | -0.352 | 0.644 |
| BL6 | -0.507 | -0.12 |
| BL6a | -0.363 | -0.056 |
| BXD01 | -0.219 | -0.796 |
| BXD010 | -0.161 | -1.174 |
| BXD011 | -0.493 | -1.025 |
| BXD03 | 0.073 | -1.109 |
| BXD04 | -0.227 | -0.905 |
| BXD05 | -0.277 | -1.535 |
| BXD06 | -0.435 | -1.61 |
| BXD07 | -0.393 | -1.365 |
| BXD08 | -0.589 | -0.991 |
| BXD09 | -0.582 | -1.896 |
| CAST | -0.491 | 0.442 |
| CCcont | -0.578 | -1.319 |
| DS01 | 1.03 | 0.652 |
| DS02 | 0.624 | 0.646 |
| DS04 | 0.184 | 0.715 |
| DS0c | 1.075 | 1.032 |
| GP01 | 0.56 | -0.028 |
| GP02 | -0.33 | -0.119 |
| GP0c | -0.348 | -1.027 |
| NOD | -0.345 | 0.296 |
| NZO | -0.051 | -0.75 |
| PWK | -0.219 | 0.742 |
| H37Rv_KO_CtpC | -0.688 | -0.411 |
| H37Rv_KO_CtpD | 0.845 | 0.557 |
| H37Rv_KO_Rv1272 | -0.138 | -0.179 |
| H37Rv_KO_SugABC | -0.298 | -2.188 |
| H37Rv_KO_MbtN | -0.99 | -1.155 |
| Trans05 | 0.265 | -0.125 |
| macrophage_unactivated | -0.243 | -0.672 |
| IL1 | -0.472 | -2.186 |
| Rapamycin | 0.129 | -1.501 |
| Tcell | -0.596 | -0.978 |
| GMCSF | -0.42 | -0.911 |
| IFNab | -0.517 | -1.403 |
| IFNg | -0.267 | -2.576 |
| IFNg_GMCSF1 | -0.39 | -1.304 |
| Rv1432_day32 | 0.416 | 0.222 |
| Rv1565c_day32 | 0.232 | 0.205 |
| secA2_input | 0.299 | 1.19 |
| delta_Rv3594 | 0.353 | -0.298 |
| delta_Rv3717 | 0.137 | -0.944 |
| delta_Rv3811 | 0.584 | -0.335 |
| delta_Rv0954 | -0.541 | -0.068 |
| PonA1 | 0.328 | -0.387 |
| EccD1_KO | 0.395 | 0.97 |
| EspI_KO | -0.031 | -0.046 |
| PE35_KO | 0.586 | -0.245 |
| PPE68_KO | 0.861 | -0.106 |
| glycerol2 | 0.076 | -0.247 |
| lignocerate | -0.426 | -0.458 |
| oleate | 0.581 | -0.065 |
| phosphatidylcholine | 0.076 | -0.27 |
| acetate | -0.7 | -0.899 |
| glucAc | -0.728 | -0.13 |
| Rv0950ko | -0.763 | -1.167 |
| Rv1096ko | -1.321 | -0.691 |
| Rv3684ko | -0.259 | -0.698 |
| delta_otsA_trehalose | 0.202 | -0.214 |