Top 10 genes with highest correlation to Rv3827c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0764c/cyp51 | (cc=0.4964) | info on Rv0764c/cyp51 |
| Rv3328c/sigJ | (cc=0.4959) | info on Rv3328c/sigJ |
| Rv1221/sigE | (cc=0.4885) | info on Rv1221/sigE |
| Rv1036c/- | (cc=0.4717) | info on Rv1036c/- |
| Rv3038c/- | (cc=0.4559) | info on Rv3038c/- |
| Rv2741/PE_PGRS47 | (cc=0.4553) | info on Rv2741/PE_PGRS47 |
| Rv1953/vapC14 | (cc=0.4423) | info on Rv1953/vapC14 |
| Rv1916/aceAb | (cc=0.442) | info on Rv1916/aceAb |
| Rv1453/- | (cc=0.4415) | info on Rv1453/- |
| Rv3453/- | (cc=0.4361) | info on Rv3453/- |
Correlation of Rv3827c/- with Rv1221/sigE
Normalized LFCs for Rv3827c/-:
(description and provenance of datasets)
| Rv3827c/- | Rv1221/sigE | |
| Fe_supp_jason_reseq | 0.074 | 2.602 |
| low_pH_jason_reseq | -0.489 | 0.156 |
| NO_jason_reseq | 0.063 | 0.895 |
| B6_jason_reseq | 0.078 | 0.752 |
| MHCII_jason_reseq | 0.155 | 1.311 |
| Isoniazid02 | -0.102 | 0.682 |
| Rifampicin4 | 0.403 | 0.146 |
| Ethambutol3 | -0.085 | -0.646 |
| Meropenem3 | 0.379 | -0.212 |
| Vancomycin16 | 0.464 | -0.305 |
| Rv2680_day32 | -0.041 | 0.651 |
| H37Rv_KO_MarP | 0.487 | -0.313 |
| hypoxia_3wks | 0.04 | -0.128 |
| hypoxia_6wks | 0.04 | -1.495 |
| glycerol | 0.18 | -0.967 |
| cholesterol | 0.194 | -0.197 |
| AJ | -0.227 | -0.373 |
| Bibs02 | -0.046 | -0.698 |
| Bibs02c | -0.352 | -0.39 |
| BL6 | -0.507 | -1.107 |
| BL6a | -0.363 | -0.472 |
| BXD01 | -0.219 | -0.58 |
| BXD010 | -0.161 | -0.749 |
| BXD011 | -0.493 | -1.333 |
| BXD03 | 0.073 | -0.79 |
| BXD04 | -0.227 | -1.035 |
| BXD05 | -0.277 | 0.33 |
| BXD06 | -0.435 | -0.832 |
| BXD07 | -0.393 | -1.713 |
| BXD08 | -0.589 | -1.392 |
| BXD09 | -0.582 | -0.374 |
| CAST | -0.491 | -1.927 |
| CCcont | -0.578 | -0.397 |
| DS01 | 1.03 | 0.286 |
| DS02 | 0.624 | -0.35 |
| DS04 | 0.184 | -0.929 |
| DS0c | 1.075 | -0.193 |
| GP01 | 0.56 | -1.292 |
| GP02 | -0.33 | -0.92 |
| GP0c | -0.348 | -1.702 |
| NOD | -0.345 | -1.487 |
| NZO | -0.051 | -1.669 |
| PWK | -0.219 | -1.147 |
| H37Rv_KO_CtpC | -0.688 | -1.359 |
| H37Rv_KO_CtpD | 0.845 | -0.113 |
| H37Rv_KO_Rv1272 | -0.138 | -1.846 |
| H37Rv_KO_SugABC | -0.298 | -1.159 |
| H37Rv_KO_MbtN | -0.99 | -0.459 |
| Trans05 | 0.265 | 0.23 |
| macrophage_unactivated | -0.243 | 0.202 |
| IL1 | -0.472 | -0.629 |
| Rapamycin | 0.129 | -0.424 |
| Tcell | -0.596 | -1.212 |
| GMCSF | -0.42 | -0.269 |
| IFNab | -0.517 | -0.641 |
| IFNg | -0.267 | -0.994 |
| IFNg_GMCSF1 | -0.39 | -2.049 |
| Rv1432_day32 | 0.416 | -0.139 |
| Rv1565c_day32 | 0.232 | 0.158 |
| secA2_input | 0.299 | -0.931 |
| delta_Rv3594 | 0.353 | 0.057 |
| delta_Rv3717 | 0.137 | -0.736 |
| delta_Rv3811 | 0.584 | -0.171 |
| delta_Rv0954 | -0.541 | -0.149 |
| PonA1 | 0.328 | 1.154 |
| EccD1_KO | 0.395 | -0.28 |
| EspI_KO | -0.031 | 1.383 |
| PE35_KO | 0.586 | 2.856 |
| PPE68_KO | 0.861 | 2.003 |
| glycerol2 | 0.076 | 0.42 |
| lignocerate | -0.426 | -0.647 |
| oleate | 0.581 | 0.457 |
| phosphatidylcholine | 0.076 | 0.513 |
| acetate | -0.7 | -0.949 |
| glucAc | -0.728 | -1.283 |
| Rv0950ko | -0.763 | -1.643 |
| Rv1096ko | -1.321 | -1.644 |
| Rv3684ko | -0.259 | -2.05 |
| delta_otsA_trehalose | 0.202 | 0.322 |