TnSeqCorr

Top 10 genes with highest correlation to Rv3641c/fic:

update plotcorrelationlink to info on gene
Rv3295/- (cc=0.6863) info on Rv3295/-
Rv2633c/- (cc=0.6703) info on Rv2633c/-
Rv3204/- (cc=0.6526) info on Rv3204/-
Rv2681/- (cc=0.6413) info on Rv2681/-
Rv0228/- (cc=0.6367) info on Rv0228/-
Rv1182/papA3 (cc=0.6328) info on Rv1182/papA3
Rv3354/- (cc=0.6254) info on Rv3354/-
Rv2768c/PPE43 (cc=0.6088) info on Rv2768c/PPE43
Rv2669/- (cc=0.6074) info on Rv2669/-
Rv2636/- (cc=0.6052) info on Rv2636/-

Correlation of Rv3641c/fic with Rv3354/-

Normalized LFCs for Rv3641c/fic:
(description and provenance of datasets)
Rv3641c/ficRv3354/-
Fe_supp_jason_reseq

0.134

-1.138

low_pH_jason_reseq

-0.298

-0.381

NO_jason_reseq

0.396

-0.793

B6_jason_reseq

0.721

0.985

MHCII_jason_reseq

0.954

1.019

Isoniazid02

0.196

1.043

Rifampicin4

-0.363

0.125

Ethambutol3

-0.136

0.398

Meropenem3

0.684

1.179

Vancomycin16

-0.202

0.162

Rv2680_day32

0.825

0.659

H37Rv_KO_MarP

1.0

0.422

hypoxia_3wks

-0.044

-0.347

hypoxia_6wks

0.033

-0.595

glycerol

0.186

0.674

cholesterol

0.07

0.892

AJ

0.276

-0.171

Bibs02

-0.179

-0.029

Bibs02c

0.159

0.596

BL6

-0.691

-0.912

BL6a

-1.482

-0.067

BXD01

-0.277

-1.687

BXD010

-0.343

-1.434

BXD011

-1.176

-2.812

BXD03

-0.536

-2.487

BXD04

-0.746

-1.729

BXD05

-1.159

-1.146

BXD06

-1.08

-1.932

BXD07

-1.24

-2.262

BXD08

-0.466

-1.667

BXD09

-1.22

-2.542

CAST

-0.27

0.097

CCcont

-0.475

-1.82

DS01

0.435

-0.077

DS02

-0.131

0.269

DS04

0.807

0.395

DS0c

0.223

-0.597

GP01

-1.119

-1.486

GP02

-1.47

-0.295

GP0c

-1.128

-0.754

NOD

0.072

-0.169

NZO

0.023

0.127

PWK

0.259

0.367

H37Rv_KO_CtpC

-0.686

-0.788

H37Rv_KO_CtpD

-0.398

-1.146

H37Rv_KO_Rv1272

-0.506

-0.927

H37Rv_KO_SugABC

0.062

-0.855

H37Rv_KO_MbtN

-0.915

-1.624

Trans05

-0.448

-0.244

macrophage_unactivated

-0.357

-1.654

IL1

-1.566

-1.649

Rapamycin

-1.04

-1.034

Tcell

-0.619

-1.473

GMCSF

0.021

-2.118

IFNab

-1.303

-2.056

IFNg

-0.959

-0.949

IFNg_GMCSF1

-0.974

-0.641

Rv1432_day32

-0.523

0.3

Rv1565c_day32

0.545

0.635

secA2_input

0.647

0.645

delta_Rv3594

0.052

-0.395

delta_Rv3717

-0.284

-0.21

delta_Rv3811

-0.36

0.592

delta_Rv0954

-0.527

0.58

PonA1

-0.074

-0.802

EccD1_KO

-0.132

1.217

EspI_KO

-0.131

1.201

PE35_KO

-0.645

0.204

PPE68_KO

-0.458

1.254

glycerol2

0.867

1.595

lignocerate

0.83

1.672

oleate

1.269

0.822

phosphatidylcholine

0.982

1.291

acetate

0.359

1.047

glucAc

0.185

1.449

Rv0950ko

-0.121

0.365

Rv1096ko

-0.609

0.268

Rv3684ko

-0.639

0.933

delta_otsA_trehalose

-0.716

0.808