TnSeqCorr

Top 10 genes with highest correlation to Rv3615c/espC:

update plotcorrelationlink to info on gene
Rv3614c/espD (cc=0.9176) info on Rv3614c/espD
Rv3871/eccCb1 (cc=0.9127) info on Rv3871/eccCb1
Rv3882c/eccE1 (cc=0.9005) info on Rv3882c/eccE1
Rv3883c/mycP1 (cc=0.8951) info on Rv3883c/mycP1
Rv3870/eccCa1 (cc=0.8931) info on Rv3870/eccCa1
Rv3616c/espA (cc=0.8784) info on Rv3616c/espA
Rv3869/eccB1 (cc=0.8729) info on Rv3869/eccB1
Rv3544c/fadE28 (cc=0.8371) info on Rv3544c/fadE28
Rv3877/eccD1 (cc=0.8359) info on Rv3877/eccD1
Rv3551/- (cc=0.8327) info on Rv3551/-

Correlation of Rv3615c/espC with Rv3871/eccCb1

Normalized LFCs for Rv3615c/espC:
(description and provenance of datasets)
Rv3615c/espCRv3871/eccCb1
Fe_supp_jason_reseq

-0.076

-0.256

low_pH_jason_reseq

-0.791

-0.375

NO_jason_reseq

-0.179

0.189

B6_jason_reseq

-2.738

-2.391

MHCII_jason_reseq

-3.219

-3.223

Isoniazid02

-1.534

-0.394

Rifampicin4

0.663

-0.639

Ethambutol3

0.61

0.623

Meropenem3

-0.927

-0.077

Vancomycin16

-0.438

-0.573

Rv2680_day32

-2.287

-1.865

H37Rv_KO_MarP

0.763

1.569

hypoxia_3wks

-0.642

0.239

hypoxia_6wks

-0.453

0.413

glycerol

-1.542

-0.415

cholesterol

-2.127

0.035

AJ

-4.615

-3.714

Bibs02

-6.0

-4.951

Bibs02c

-5.515

-4.28

BL6

-1.925

-1.666

BL6a

-4.038

-4.183

BXD01

-2.432

-2.459

BXD010

-1.317

-2.418

BXD011

-2.379

-2.78

BXD03

-2.734

-2.629

BXD04

-1.094

-2.893

BXD05

-2.385

-2.873

BXD06

-3.264

-3.463

BXD07

-2.435

-3.09

BXD08

-3.429

-3.074

BXD09

-3.21

-3.696

CAST

-4.656

-4.97

CCcont

0.08

-0.915

DS01

-5.297

-3.653

DS02

-6.0

-4.911

DS04

-3.797

-2.055

DS0c

-6.0

-5.705

GP01

-1.918

-1.9

GP02

-2.771

-2.439

GP0c

-0.687

-0.366

NOD

-0.556

-2.198

NZO

-4.599

-4.452

PWK

-5.419

-5.476

H37Rv_KO_CtpC

-1.589

-2.03

H37Rv_KO_CtpD

-0.43

-0.75

H37Rv_KO_Rv1272

-1.432

-1.577

H37Rv_KO_SugABC

-1.494

-0.315

H37Rv_KO_MbtN

0.721

0.548

Trans05

-1.485

-1.279

macrophage_unactivated

-1.203

-1.187

IL1

-0.303

-0.839

Rapamycin

-0.761

-0.703

Tcell

-2.278

-1.714

GMCSF

0.887

0.845

IFNab

0.629

1.569

IFNg

-1.924

-1.978

IFNg_GMCSF1

-1.304

-1.181

Rv1432_day32

-2.181

-2.946

Rv1565c_day32

-3.023

-3.502

secA2_input

0.844

-0.337

delta_Rv3594

0.45

-0.015

delta_Rv3717

-0.276

-1.033

delta_Rv3811

-0.611

-0.617

delta_Rv0954

0.062

-0.079

PonA1

-1.032

-0.382

EccD1_KO

-0.247

0.493

EspI_KO

-0.639

0.291

PE35_KO

-0.096

-0.19

PPE68_KO

-0.403

0.051

glycerol2

0.556

0.136

lignocerate

0.544

0.105

oleate

-0.103

0.549

phosphatidylcholine

-0.066

0.43

acetate

-0.146

-0.369

glucAc

-0.122

-0.278

Rv0950ko

-0.256

0.32

Rv1096ko

-1.122

-0.018

Rv3684ko

-0.668

0.111

delta_otsA_trehalose

1.448

0.176