Top 10 genes with highest correlation to Rv2714/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1109c/- | (cc=0.536) | info on Rv1109c/- |
| Rv2946c/pks1 | (cc=0.4534) | info on Rv2946c/pks1 |
| Rv2937/drrB | (cc=0.4507) | info on Rv2937/drrB |
| Rv0190/- | (cc=0.4395) | info on Rv0190/- |
| Rv2231c/cobC | (cc=0.4363) | info on Rv2231c/cobC |
| Rv2948c/fadD22 | (cc=0.4215) | info on Rv2948c/fadD22 |
| Rv0353/hspR | (cc=0.4206) | info on Rv0353/hspR |
| Rv2945c/lppX | (cc=0.4198) | info on Rv2945c/lppX |
| Rv2849c/cobO | (cc=0.4141) | info on Rv2849c/cobO |
| Rv3500c/yrbE4B | (cc=0.4123) | info on Rv3500c/yrbE4B |
Correlation of Rv2714/- with Rv0190/-
Normalized LFCs for Rv2714/-:
(description and provenance of datasets)
| Rv2714/- | Rv0190/- | |
| Fe_supp_jason_reseq | 0.635 | 3.343 |
| low_pH_jason_reseq | -0.157 | -0.417 |
| NO_jason_reseq | -0.722 | -0.189 |
| B6_jason_reseq | 0.515 | 0.219 |
| MHCII_jason_reseq | 0.029 | -1.92 |
| Isoniazid02 | 0.691 | -2.708 |
| Rifampicin4 | -0.523 | 0.046 |
| Ethambutol3 | 0.263 | -0.479 |
| Meropenem3 | 0.831 | 0.736 |
| Vancomycin16 | -0.777 | -0.923 |
| Rv2680_day32 | 0.343 | -2.322 |
| H37Rv_KO_MarP | -0.464 | -0.701 |
| hypoxia_3wks | -0.084 | -1.95 |
| hypoxia_6wks | 0.867 | -0.349 |
| glycerol | -1.63 | -1.024 |
| cholesterol | -0.299 | -2.25 |
| AJ | -2.227 | -5.593 |
| Bibs02 | -0.132 | -5.141 |
| Bibs02c | -0.227 | -3.794 |
| BL6 | 0.133 | -2.372 |
| BL6a | 0.055 | -3.645 |
| BXD01 | -0.46 | -2.362 |
| BXD010 | 0.58 | -3.899 |
| BXD011 | 0.489 | -2.848 |
| BXD03 | 0.189 | -1.208 |
| BXD04 | 1.054 | -2.458 |
| BXD05 | -0.175 | -2.27 |
| BXD06 | -0.159 | -2.189 |
| BXD07 | -0.033 | -3.551 |
| BXD08 | 0.77 | -3.029 |
| BXD09 | -0.323 | -3.035 |
| CAST | -1.93 | -3.482 |
| CCcont | -0.433 | -0.227 |
| DS01 | -0.421 | -4.041 |
| DS02 | -0.797 | -4.392 |
| DS04 | -0.586 | -1.255 |
| DS0c | -0.225 | -3.414 |
| GP01 | -0.117 | -3.194 |
| GP02 | -0.808 | -2.692 |
| GP0c | -1.062 | -3.568 |
| NOD | -2.293 | -1.616 |
| NZO | -2.217 | -6.0 |
| PWK | -1.123 | -5.972 |
| H37Rv_KO_CtpC | 3.155 | 0.746 |
| H37Rv_KO_CtpD | 0.453 | -1.413 |
| H37Rv_KO_Rv1272 | 0.668 | -3.099 |
| H37Rv_KO_SugABC | 0.699 | -0.487 |
| H37Rv_KO_MbtN | 0.768 | 0.22 |
| Trans05 | 0.45 | -2.773 |
| macrophage_unactivated | 0.584 | 0.098 |
| IL1 | 1.622 | -1.486 |
| Rapamycin | 0.709 | -0.509 |
| Tcell | 2.564 | 2.203 |
| GMCSF | -0.251 | -1.502 |
| IFNab | -1.315 | -1.793 |
| IFNg | 0.222 | -0.54 |
| IFNg_GMCSF1 | 0.082 | -0.987 |
| Rv1432_day32 | -1.296 | -5.743 |
| Rv1565c_day32 | -1.681 | -2.011 |
| secA2_input | 0.313 | -0.775 |
| delta_Rv3594 | 1.039 | -1.811 |
| delta_Rv3717 | 0.97 | -1.032 |
| delta_Rv3811 | 0.244 | -1.524 |
| delta_Rv0954 | 0.833 | -0.092 |
| PonA1 | 0.419 | 0.534 |
| EccD1_KO | -0.362 | -1.638 |
| EspI_KO | 0.394 | -2.493 |
| PE35_KO | -0.939 | -0.537 |
| PPE68_KO | -0.909 | -0.022 |
| glycerol2 | -0.654 | -3.834 |
| lignocerate | -0.734 | -3.114 |
| oleate | -0.605 | -4.388 |
| phosphatidylcholine | -0.104 | -2.787 |
| acetate | -0.647 | -0.864 |
| glucAc | -0.567 | -0.64 |
| Rv0950ko | -0.926 | 0.838 |
| Rv1096ko | -0.326 | -0.685 |
| Rv3684ko | -0.445 | 0.449 |
| delta_otsA_trehalose | 0.34 | -0.116 |