Top 10 genes with highest correlation to Rv2714/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1109c/- | (cc=0.536) | info on Rv1109c/- |
| Rv2946c/pks1 | (cc=0.4534) | info on Rv2946c/pks1 |
| Rv2937/drrB | (cc=0.4507) | info on Rv2937/drrB |
| Rv0190/- | (cc=0.4395) | info on Rv0190/- |
| Rv2231c/cobC | (cc=0.4363) | info on Rv2231c/cobC |
| Rv2948c/fadD22 | (cc=0.4215) | info on Rv2948c/fadD22 |
| Rv0353/hspR | (cc=0.4206) | info on Rv0353/hspR |
| Rv2945c/lppX | (cc=0.4198) | info on Rv2945c/lppX |
| Rv2849c/cobO | (cc=0.4141) | info on Rv2849c/cobO |
| Rv3500c/yrbE4B | (cc=0.4123) | info on Rv3500c/yrbE4B |
Correlation of Rv2714/- with Rv1109c/-
Normalized LFCs for Rv2714/-:
(description and provenance of datasets)
| Rv2714/- | Rv1109c/- | |
| Fe_supp_jason_reseq | 0.635 | 0.666 |
| low_pH_jason_reseq | -0.157 | -0.069 |
| NO_jason_reseq | -0.722 | -0.837 |
| B6_jason_reseq | 0.515 | -1.372 |
| MHCII_jason_reseq | 0.029 | -0.925 |
| Isoniazid02 | 0.691 | 0.837 |
| Rifampicin4 | -0.523 | -0.636 |
| Ethambutol3 | 0.263 | 0.952 |
| Meropenem3 | 0.831 | 0.329 |
| Vancomycin16 | -0.777 | -0.576 |
| Rv2680_day32 | 0.343 | -0.461 |
| H37Rv_KO_MarP | -0.464 | -0.742 |
| hypoxia_3wks | -0.084 | 0.195 |
| hypoxia_6wks | 0.867 | 0.136 |
| glycerol | -1.63 | 0.983 |
| cholesterol | -0.299 | 0.101 |
| AJ | -2.227 | -2.681 |
| Bibs02 | -0.132 | -1.534 |
| Bibs02c | -0.227 | 0.681 |
| BL6 | 0.133 | 0.261 |
| BL6a | 0.055 | 0.676 |
| BXD01 | -0.46 | 0.339 |
| BXD010 | 0.58 | -0.31 |
| BXD011 | 0.489 | 1.074 |
| BXD03 | 0.189 | -0.722 |
| BXD04 | 1.054 | 0.409 |
| BXD05 | -0.175 | -0.671 |
| BXD06 | -0.159 | -0.229 |
| BXD07 | -0.033 | 0.272 |
| BXD08 | 0.77 | -0.029 |
| BXD09 | -0.323 | 0.189 |
| CAST | -1.93 | -2.611 |
| CCcont | -0.433 | 0.517 |
| DS01 | -0.421 | -0.347 |
| DS02 | -0.797 | 0.334 |
| DS04 | -0.586 | -1.448 |
| DS0c | -0.225 | -1.106 |
| GP01 | -0.117 | -0.426 |
| GP02 | -0.808 | -0.711 |
| GP0c | -1.062 | -0.268 |
| NOD | -2.293 | -2.319 |
| NZO | -2.217 | -1.946 |
| PWK | -1.123 | -2.693 |
| H37Rv_KO_CtpC | 3.155 | 0.091 |
| H37Rv_KO_CtpD | 0.453 | 1.105 |
| H37Rv_KO_Rv1272 | 0.668 | -0.608 |
| H37Rv_KO_SugABC | 0.699 | 0.393 |
| H37Rv_KO_MbtN | 0.768 | 0.285 |
| Trans05 | 0.45 | -0.353 |
| macrophage_unactivated | 0.584 | 1.25 |
| IL1 | 1.622 | 1.258 |
| Rapamycin | 0.709 | 0.506 |
| Tcell | 2.564 | 0.668 |
| GMCSF | -0.251 | 0.177 |
| IFNab | -1.315 | 0.599 |
| IFNg | 0.222 | 0.369 |
| IFNg_GMCSF1 | 0.082 | -0.559 |
| Rv1432_day32 | -1.296 | -2.095 |
| Rv1565c_day32 | -1.681 | -2.199 |
| secA2_input | 0.313 | 1.035 |
| delta_Rv3594 | 1.039 | 1.361 |
| delta_Rv3717 | 0.97 | 0.148 |
| delta_Rv3811 | 0.244 | 0.271 |
| delta_Rv0954 | 0.833 | 1.585 |
| PonA1 | 0.419 | 1.165 |
| EccD1_KO | -0.362 | 1.276 |
| EspI_KO | 0.394 | 0.234 |
| PE35_KO | -0.939 | 0.335 |
| PPE68_KO | -0.909 | 1.241 |
| glycerol2 | -0.654 | 0.154 |
| lignocerate | -0.734 | 0.024 |
| oleate | -0.605 | -0.295 |
| phosphatidylcholine | -0.104 | 0.567 |
| acetate | -0.647 | -0.263 |
| glucAc | -0.567 | -0.264 |
| Rv0950ko | -0.926 | 0.645 |
| Rv1096ko | -0.326 | 0.799 |
| Rv3684ko | -0.445 | -0.236 |
| delta_otsA_trehalose | 0.34 | 1.439 |