TnSeqCorr

Top 10 genes with highest correlation to Rv0758/phoR:

update plotcorrelationlink to info on gene
Rv0757/phoP (cc=0.8487) info on Rv0757/phoP
Rv2633c/- (cc=0.7415) info on Rv2633c/-
Rv3295/- (cc=0.6728) info on Rv3295/-
Rv0136/cyp138 (cc=0.6485) info on Rv0136/cyp138
Rv3136A/- (cc=0.6323) info on Rv3136A/-
Rv1323/fadA4 (cc=0.63) info on Rv1323/fadA4
Rv2474c/- (cc=0.6177) info on Rv2474c/-
Rv0043c/- (cc=0.6163) info on Rv0043c/-
Rv3058c/- (cc=0.6161) info on Rv3058c/-
Rv2681/- (cc=0.6119) info on Rv2681/-

Correlation of Rv0758/phoR with Rv3058c/-

Normalized LFCs for Rv0758/phoR:
(description and provenance of datasets)
Rv0758/phoRRv3058c/-
Fe_supp_jason_reseq

1.258

-0.339

low_pH_jason_reseq

1.807

-1.275

NO_jason_reseq

-3.087

-1.42

B6_jason_reseq

2.199

-1.367

MHCII_jason_reseq

-0.252

-0.287

Isoniazid02

-3.111

-2.551

Rifampicin4

-2.055

-1.375

Ethambutol3

0.276

1.008

Meropenem3

2.037

-0.89

Vancomycin16

-0.987

-1.971

Rv2680_day32

1.87

-1.059

H37Rv_KO_MarP

4.04

2.314

hypoxia_3wks

-1.519

-0.367

hypoxia_6wks

-3.418

-0.134

glycerol

-6.0

-1.219

cholesterol

-5.874

-2.073

AJ

-5.577

0.255

Bibs02

-3.968

-1.526

Bibs02c

-3.403

-1.629

BL6

-5.388

-2.223

BL6a

-4.919

-1.871

BXD01

-5.61

-2.739

BXD010

-4.365

-2.712

BXD011

-5.073

-2.487

BXD03

-5.701

-1.704

BXD04

-5.449

-2.414

BXD05

-5.458

-2.911

BXD06

-5.628

-3.679

BXD07

-6.0

-3.23

BXD08

-5.729

-1.966

BXD09

-6.0

-4.27

CAST

-5.027

0.46

CCcont

-3.151

-0.791

DS01

-4.423

-1.879

DS02

-2.169

-2.874

DS04

-3.031

-3.405

DS0c

-3.204

-2.72

GP01

-3.866

-2.006

GP02

-3.314

-2.73

GP0c

-3.317

-3.106

NOD

-3.479

0.672

NZO

-6.0

-0.623

PWK

-5.005

0.51

H37Rv_KO_CtpC

-3.409

-0.211

H37Rv_KO_CtpD

-1.425

-1.019

H37Rv_KO_Rv1272

-4.864

-2.109

H37Rv_KO_SugABC

-3.756

-3.448

H37Rv_KO_MbtN

-3.599

-2.442

Trans05

-4.881

-2.637

macrophage_unactivated

-6.0

-1.231

IL1

-4.942

-1.744

Rapamycin

-5.518

-1.66

Tcell

-6.0

-0.873

GMCSF

-6.0

-1.164

IFNab

-6.0

-3.516

IFNg

-6.0

-1.625

IFNg_GMCSF1

-6.0

-1.91

Rv1432_day32

0.18

-2.632

Rv1565c_day32

2.088

0.069

secA2_input

-1.115

0.609

delta_Rv3594

-5.632

-1.138

delta_Rv3717

-3.301

-2.022

delta_Rv3811

-5.661

-1.553

delta_Rv0954

-0.881

0.774

PonA1

1.487

2.176

EccD1_KO

-1.973

-0.398

EspI_KO

-1.84

-0.22

PE35_KO

-0.058

0.831

PPE68_KO

-0.976

0.666

glycerol2

-0.68

4.618

lignocerate

0.0

2.532

oleate

2.006

0.679

phosphatidylcholine

6.0

5.238

acetate

-1.342

0.53

glucAc

-0.964

-0.159

Rv0950ko

-0.296

0.362

Rv1096ko

-0.296

-0.09

Rv3684ko

0.301

0.282

delta_otsA_trehalose

-1.214

-0.217