TnSeqCorr

Top 10 genes with highest correlation to Rv0465c/-:

update plotcorrelationlink to info on gene
Rv2564/glnQ (cc=0.6485) info on Rv2564/glnQ
Rv2563/- (cc=0.6143) info on Rv2563/-
Rv1657/argR (cc=0.6059) info on Rv1657/argR
Rv2739c/- (cc=0.5717) info on Rv2739c/-
Rv1287/- (cc=0.5699) info on Rv1287/-
Rv2681/- (cc=0.5672) info on Rv2681/-
Rv3412/- (cc=0.5574) info on Rv3412/-
Rv2258c/- (cc=0.5573) info on Rv2258c/-
Rv0406c/- (cc=0.5522) info on Rv0406c/-
Rv1323/fadA4 (cc=0.5412) info on Rv1323/fadA4

Correlation of Rv0465c/- with Rv1657/argR

Normalized LFCs for Rv0465c/-:
(description and provenance of datasets)
Rv0465c/-Rv1657/argR
Fe_supp_jason_reseq

-0.262

-1.639

low_pH_jason_reseq

-1.584

-2.076

NO_jason_reseq

-1.764

-1.801

B6_jason_reseq

-4.054

0.006

MHCII_jason_reseq

-2.419

0.433

Isoniazid02

-0.202

0.969

Rifampicin4

-0.276

0.479

Ethambutol3

0.803

0.495

Meropenem3

0.49

-0.157

Vancomycin16

0.204

0.0

Rv2680_day32

-3.876

-2.613

H37Rv_KO_MarP

0.076

0.363

hypoxia_3wks

0.542

-1.192

hypoxia_6wks

-1.002

-1.656

glycerol

0.753

1.641

cholesterol

4.059

-0.061

AJ

-2.266

-1.037

Bibs02

-0.642

-0.156

Bibs02c

0.596

-1.432

BL6

-2.782

-2.797

BL6a

-0.521

-2.043

BXD01

-2.852

-2.399

BXD010

-2.113

-1.531

BXD011

-2.747

-3.232

BXD03

-1.251

-2.075

BXD04

-1.107

-1.329

BXD05

-2.859

-1.63

BXD06

-2.229

-2.42

BXD07

-2.942

-2.322

BXD08

-2.167

-2.3

BXD09

-3.227

-3.271

CAST

-1.201

-0.556

CCcont

-0.33

-0.936

DS01

0.527

0.441

DS02

-0.074

-0.581

DS04

-0.275

0.476

DS0c

0.206

0.097

GP01

-2.267

-0.916

GP02

-2.397

-1.791

GP0c

-3.195

-1.533

NOD

-0.53

-0.69

NZO

-2.471

-2.384

PWK

-0.894

0.21

H37Rv_KO_CtpC

-1.124

0.128

H37Rv_KO_CtpD

-0.417

-3.369

H37Rv_KO_Rv1272

-2.217

-1.829

H37Rv_KO_SugABC

-1.503

-0.995

H37Rv_KO_MbtN

-1.564

-1.995

Trans05

-2.583

-3.393

macrophage_unactivated

-0.29

-1.626

IL1

-3.005

-0.955

Rapamycin

-0.586

-1.402

Tcell

-0.391

-1.307

GMCSF

-1.13

-2.038

IFNab

0.807

-0.357

IFNg

-4.004

-2.51

IFNg_GMCSF1

-3.881

-2.055

Rv1432_day32

-3.94

-3.331

Rv1565c_day32

1.414

-0.025

secA2_input

0.291

0.24

delta_Rv3594

-0.698

-0.378

delta_Rv3717

-0.904

-1.114

delta_Rv3811

-0.828

-1.735

delta_Rv0954

-0.247

0.362

PonA1

-0.044

-0.268

EccD1_KO

-0.602

0.694

EspI_KO

-0.108

1.483

PE35_KO

0.067

0.499

PPE68_KO

-0.15

-0.029

glycerol2

-0.841

0.017

lignocerate

-0.818

-0.774

oleate

-0.927

-1.198

phosphatidylcholine

-1.634

-1.566

acetate

-0.424

-0.509

glucAc

-0.146

-0.921

Rv0950ko

0.069

-0.787

Rv1096ko

-0.645

0.528

Rv3684ko

-0.331

-0.586

delta_otsA_trehalose

1.184

-0.58