TnSeqCorr

Top 10 genes with highest correlation to Rv0130/htdZ:

update plotcorrelationlink to info on gene
Rv0760c/- (cc=0.4933) info on Rv0760c/-
Rv0188/- (cc=0.4651) info on Rv0188/-
Rv2775/- (cc=0.4627) info on Rv2775/-
Rv1662/pks8 (cc=0.4532) info on Rv1662/pks8
Rv0990c/- (cc=0.4354) info on Rv0990c/-
Rv3138/pflA (cc=0.4242) info on Rv3138/pflA
Rv0078/- (cc=0.4131) info on Rv0078/-
Rv1498c/- (cc=0.4113) info on Rv1498c/-
Rv2496c/bkdB (cc=0.4062) info on Rv2496c/bkdB
Rv3829c/- (cc=0.4047) info on Rv3829c/-

Correlation of Rv0130/htdZ with Rv2496c/bkdB

Normalized LFCs for Rv0130/htdZ:
(description and provenance of datasets)
Rv0130/htdZRv2496c/bkdB
Fe_supp_jason_reseq

-1.467

0.469

low_pH_jason_reseq

-0.544

0.381

NO_jason_reseq

-0.055

1.197

B6_jason_reseq

-0.626

-1.586

MHCII_jason_reseq

-0.694

0.223

Isoniazid02

-2.466

0.135

Rifampicin4

-1.73

-1.21

Ethambutol3

-1.065

0.22

Meropenem3

-0.833

-0.789

Vancomycin16

-2.157

-0.13

Rv2680_day32

-0.249

-0.05

H37Rv_KO_MarP

0.838

-0.354

hypoxia_3wks

-1.188

0.63

hypoxia_6wks

-0.622

0.0

glycerol

-0.907

-1.463

cholesterol

-0.797

-0.691

AJ

-0.029

0.442

Bibs02

-3.696

-0.273

Bibs02c

-2.805

-1.375

BL6

0.616

1.107

BL6a

-0.353

0.198

BXD01

1.054

1.094

BXD010

1.661

0.629

BXD011

0.985

0.448

BXD03

-1.262

0.882

BXD04

-1.154

1.131

BXD05

3.157

0.602

BXD06

0.274

0.535

BXD07

0.0

1.247

BXD08

0.016

0.253

BXD09

0.859

0.347

CAST

0.472

-1.23

CCcont

-0.643

0.917

DS01

0.228

-0.26

DS02

1.054

-0.158

DS04

-0.465

-0.453

DS0c

-0.933

0.919

GP01

1.056

0.188

GP02

-0.829

0.617

GP0c

-1.135

0.61

NOD

-0.176

-0.428

NZO

1.532

-0.144

PWK

0.722

0.067

H37Rv_KO_CtpC

1.05

0.0

H37Rv_KO_CtpD

-1.884

0.65

H37Rv_KO_Rv1272

1.221

0.227

H37Rv_KO_SugABC

-0.567

0.348

H37Rv_KO_MbtN

1.877

1.484

Trans05

1.241

1.47

macrophage_unactivated

1.597

0.597

IL1

1.326

0.878

Rapamycin

0.0

0.973

Tcell

0.831

-1.007

GMCSF

-0.61

0.89

IFNab

0.0

1.019

IFNg

0.826

0.505

IFNg_GMCSF1

-0.434

0.0

Rv1432_day32

-1.033

-0.055

Rv1565c_day32

0.0

0.231

secA2_input

-0.712

-1.244

delta_Rv3594

-1.874

-0.122

delta_Rv3717

-1.116

-0.863

delta_Rv3811

-2.439

-0.379

delta_Rv0954

-1.425

-0.886

PonA1

-3.371

-0.792

EccD1_KO

3.289

0.835

EspI_KO

-0.339

0.588

PE35_KO

2.78

0.601

PPE68_KO

3.52

1.171

glycerol2

-2.409

0.238

lignocerate

-1.196

0.284

oleate

1.544

1.259

phosphatidylcholine

-1.325

0.49

acetate

-0.062

-0.462

glucAc

-1.172

-0.586

Rv0950ko

-0.805

-0.172

Rv1096ko

1.224

0.477

Rv3684ko

1.421

0.675

delta_otsA_trehalose

0.0

-0.075