TnSeqCorr

Top 10 genes with highest correlation to Rv0130/htdZ:

update plotcorrelationlink to info on gene
Rv0760c/- (cc=0.4933) info on Rv0760c/-
Rv0188/- (cc=0.4651) info on Rv0188/-
Rv2775/- (cc=0.4627) info on Rv2775/-
Rv1662/pks8 (cc=0.4532) info on Rv1662/pks8
Rv0990c/- (cc=0.4354) info on Rv0990c/-
Rv3138/pflA (cc=0.4242) info on Rv3138/pflA
Rv0078/- (cc=0.4131) info on Rv0078/-
Rv1498c/- (cc=0.4113) info on Rv1498c/-
Rv2496c/bkdB (cc=0.4062) info on Rv2496c/bkdB
Rv3829c/- (cc=0.4047) info on Rv3829c/-

Correlation of Rv0130/htdZ with Rv1662/pks8

Normalized LFCs for Rv0130/htdZ:
(description and provenance of datasets)
Rv0130/htdZRv1662/pks8
Fe_supp_jason_reseq

-1.467

-0.458

low_pH_jason_reseq

-0.544

0.403

NO_jason_reseq

-0.055

-0.362

B6_jason_reseq

-0.626

-0.97

MHCII_jason_reseq

-0.694

-0.509

Isoniazid02

-2.466

-0.767

Rifampicin4

-1.73

-1.097

Ethambutol3

-1.065

-0.313

Meropenem3

-0.833

-1.234

Vancomycin16

-2.157

-0.974

Rv2680_day32

-0.249

-0.228

H37Rv_KO_MarP

0.838

-0.214

hypoxia_3wks

-1.188

0.55

hypoxia_6wks

-0.622

0.378

glycerol

-0.907

-0.471

cholesterol

-0.797

-0.583

AJ

-0.029

0.274

Bibs02

-3.696

0.531

Bibs02c

-2.805

-0.279

BL6

0.616

0.739

BL6a

-0.353

0.637

BXD01

1.054

0.496

BXD010

1.661

0.873

BXD011

0.985

0.626

BXD03

-1.262

0.699

BXD04

-1.154

0.64

BXD05

3.157

0.513

BXD06

0.274

0.69

BXD07

0.0

0.75

BXD08

0.016

0.786

BXD09

0.859

0.615

CAST

0.472

0.095

CCcont

-0.643

0.694

DS01

0.228

-0.205

DS02

1.054

-0.397

DS04

-0.465

0.436

DS0c

-0.933

-0.189

GP01

1.056

0.584

GP02

-0.829

-0.111

GP0c

-1.135

0.154

NOD

-0.176

0.0

NZO

1.532

-0.364

PWK

0.722

0.44

H37Rv_KO_CtpC

1.05

1.072

H37Rv_KO_CtpD

-1.884

0.368

H37Rv_KO_Rv1272

1.221

1.677

H37Rv_KO_SugABC

-0.567

-0.601

H37Rv_KO_MbtN

1.877

1.817

Trans05

1.241

0.891

macrophage_unactivated

1.597

1.016

IL1

1.326

0.558

Rapamycin

0.0

0.353

Tcell

0.831

0.375

GMCSF

-0.61

-0.108

IFNab

0.0

0.348

IFNg

0.826

0.775

IFNg_GMCSF1

-0.434

0.911

Rv1432_day32

-1.033

0.143

Rv1565c_day32

0.0

0.212

secA2_input

-0.712

-0.197

delta_Rv3594

-1.874

0.474

delta_Rv3717

-1.116

0.269

delta_Rv3811

-2.439

0.461

delta_Rv0954

-1.425

0.46

PonA1

-3.371

-0.966

EccD1_KO

3.289

-0.151

EspI_KO

-0.339

-0.405

PE35_KO

2.78

0.831

PPE68_KO

3.52

0.793

glycerol2

-2.409

-0.531

lignocerate

-1.196

-0.093

oleate

1.544

-0.469

phosphatidylcholine

-1.325

-0.106

acetate

-0.062

-0.062

glucAc

-1.172

0.146

Rv0950ko

-0.805

0.13

Rv1096ko

1.224

1.05

Rv3684ko

1.421

0.789

delta_otsA_trehalose

0.0

-0.15