Top 10 genes with highest correlation to Rv3651/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3283/sseA | (cc=0.6723) | info on Rv3283/sseA |
| Rv0406c/- | (cc=0.6591) | info on Rv0406c/- |
| Rv2681/- | (cc=0.6532) | info on Rv2681/- |
| Rv0561c/- | (cc=0.6476) | info on Rv0561c/- |
| Rv2564/glnQ | (cc=0.6365) | info on Rv2564/glnQ |
| Rv0985c/mscL | (cc=0.6364) | info on Rv0985c/mscL |
| Rv2563/- | (cc=0.6359) | info on Rv2563/- |
| Rv1657/argR | (cc=0.6184) | info on Rv1657/argR |
| Rv2669/- | (cc=0.6024) | info on Rv2669/- |
| Rv3607c/folB | (cc=0.5953) | info on Rv3607c/folB |
Correlation of Rv3651/- with Rv2564/glnQ
Normalized LFCs for Rv3651/-:
(description and provenance of datasets)
| Rv3651/- | Rv2564/glnQ | |
| Fe_supp_jason_reseq | 0.923 | 2.013 |
| low_pH_jason_reseq | -0.979 | -0.333 |
| NO_jason_reseq | -2.625 | -1.853 |
| B6_jason_reseq | -0.496 | -1.519 |
| MHCII_jason_reseq | -0.503 | -0.932 |
| Isoniazid02 | -0.528 | 0.036 |
| Rifampicin4 | -1.584 | -2.134 |
| Ethambutol3 | -0.64 | 1.918 |
| Meropenem3 | 1.677 | 0.649 |
| Vancomycin16 | -0.828 | -0.578 |
| Rv2680_day32 | -0.883 | -2.923 |
| H37Rv_KO_MarP | 0.674 | 0.621 |
| hypoxia_3wks | -2.333 | -3.038 |
| hypoxia_6wks | -1.894 | -2.011 |
| glycerol | 2.73 | 0.676 |
| cholesterol | 1.434 | 0.44 |
| AJ | 0.918 | -3.514 |
| Bibs02 | 0.525 | -2.262 |
| Bibs02c | 1.682 | 0.652 |
| BL6 | -2.121 | -2.64 |
| BL6a | 0.63 | -1.086 |
| BXD01 | -1.751 | -3.107 |
| BXD010 | -2.715 | -1.829 |
| BXD011 | -2.35 | -2.911 |
| BXD03 | -1.959 | -1.721 |
| BXD04 | -2.187 | -2.264 |
| BXD05 | -2.282 | -3.076 |
| BXD06 | -2.463 | -2.714 |
| BXD07 | -2.348 | -2.716 |
| BXD08 | -1.202 | -2.704 |
| BXD09 | -2.036 | -3.352 |
| CAST | 0.297 | -0.429 |
| CCcont | -0.318 | 0.355 |
| DS01 | 2.156 | 2.322 |
| DS02 | 2.046 | 0.607 |
| DS04 | 1.941 | 2.805 |
| DS0c | 2.549 | 1.673 |
| GP01 | 0.873 | -2.355 |
| GP02 | -0.752 | -1.985 |
| GP0c | -0.255 | -3.102 |
| NOD | 1.206 | 0.552 |
| NZO | -0.172 | -2.766 |
| PWK | 0.18 | 1.212 |
| H37Rv_KO_CtpC | -0.459 | -0.95 |
| H37Rv_KO_CtpD | -0.358 | -0.764 |
| H37Rv_KO_Rv1272 | -2.989 | -1.846 |
| H37Rv_KO_SugABC | -1.491 | -1.5 |
| H37Rv_KO_MbtN | -1.493 | -1.952 |
| Trans05 | -2.769 | -2.986 |
| macrophage_unactivated | -0.35 | 0.947 |
| IL1 | -1.284 | -1.818 |
| Rapamycin | -2.047 | -0.543 |
| Tcell | -1.906 | 0.0 |
| GMCSF | -0.958 | 0.671 |
| IFNab | -1.533 | 0.163 |
| IFNg | -1.783 | -1.013 |
| IFNg_GMCSF1 | 0.0 | -0.179 |
| Rv1432_day32 | -0.632 | -3.206 |
| Rv1565c_day32 | 0.706 | -0.509 |
| secA2_input | 0.736 | -1.198 |
| delta_Rv3594 | 0.938 | -2.272 |
| delta_Rv3717 | 0.384 | -1.869 |
| delta_Rv3811 | -0.129 | -1.817 |
| delta_Rv0954 | 2.766 | 1.292 |
| PonA1 | 0.77 | 2.505 |
| EccD1_KO | 0.77 | 0.0 |
| EspI_KO | 1.243 | -0.274 |
| PE35_KO | 2.051 | 1.126 |
| PPE68_KO | 0.749 | 0.816 |
| glycerol2 | -0.588 | -1.572 |
| lignocerate | -0.605 | -0.049 |
| oleate | -0.819 | -2.139 |
| phosphatidylcholine | -0.296 | -0.874 |
| acetate | 0.326 | 1.119 |
| glucAc | -0.686 | 0.357 |
| Rv0950ko | -0.217 | 1.414 |
| Rv1096ko | 1.279 | 0.549 |
| Rv3684ko | 1.3 | 0.088 |
| delta_otsA_trehalose | 1.864 | 1.289 |