Top 10 genes with highest correlation to Rv3197/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1568/bioA | (cc=0.7512) | info on Rv1568/bioA |
| Rv0485/- | (cc=0.7483) | info on Rv0485/- |
| Rv3616c/espA | (cc=0.7336) | info on Rv3616c/espA |
| Rv3057c/- | (cc=0.7309) | info on Rv3057c/- |
| Rv3869/eccB1 | (cc=0.7283) | info on Rv3869/eccB1 |
| Rv1493/mutB | (cc=0.7252) | info on Rv1493/mutB |
| Rv3870/eccCa1 | (cc=0.7239) | info on Rv3870/eccCa1 |
| Rv1590/- | (cc=0.7218) | info on Rv1590/- |
| Rv1569/bioF1 | (cc=0.721) | info on Rv1569/bioF1 |
| Rv3551/- | (cc=0.7199) | info on Rv3551/- |
Correlation of Rv3197/- with Rv1569/bioF1
Normalized LFCs for Rv3197/-:
(description and provenance of datasets)
| Rv3197/- | Rv1569/bioF1 | |
| Fe_supp_jason_reseq | 0.865 | 1.1 |
| low_pH_jason_reseq | -1.295 | 1.042 |
| NO_jason_reseq | 0.407 | 0.612 |
| B6_jason_reseq | -1.729 | -3.205 |
| MHCII_jason_reseq | -1.339 | -2.159 |
| Isoniazid02 | 1.461 | 0.533 |
| Rifampicin4 | -1.424 | 0.56 |
| Ethambutol3 | 0.062 | 1.251 |
| Meropenem3 | 1.488 | 2.153 |
| Vancomycin16 | -0.759 | -0.287 |
| Rv2680_day32 | -1.588 | -4.081 |
| H37Rv_KO_MarP | 0.938 | -0.133 |
| hypoxia_3wks | -0.754 | -0.49 |
| hypoxia_6wks | -0.883 | -1.731 |
| glycerol | -0.784 | -4.463 |
| cholesterol | -0.354 | -3.71 |
| AJ | -1.992 | -5.943 |
| Bibs02 | -0.815 | -4.684 |
| Bibs02c | -2.495 | -5.359 |
| BL6 | -1.298 | -3.204 |
| BL6a | -2.303 | -4.531 |
| BXD01 | -2.047 | -3.336 |
| BXD010 | -1.567 | -3.281 |
| BXD011 | -1.241 | -2.815 |
| BXD03 | -1.302 | -3.464 |
| BXD04 | -1.917 | -3.168 |
| BXD05 | -1.976 | -2.877 |
| BXD06 | -2.157 | -3.419 |
| BXD07 | -2.006 | -3.547 |
| BXD08 | -1.852 | -2.079 |
| BXD09 | -1.931 | -3.6 |
| CAST | -2.054 | -3.792 |
| CCcont | -0.78 | 0.26 |
| DS01 | -2.483 | -6.0 |
| DS02 | -1.336 | -5.571 |
| DS04 | -1.753 | -3.195 |
| DS0c | -1.614 | -5.556 |
| GP01 | 0.024 | -1.923 |
| GP02 | -0.025 | -1.779 |
| GP0c | -0.776 | 1.55 |
| NOD | -0.952 | -4.013 |
| NZO | -2.319 | -5.109 |
| PWK | -1.684 | -4.651 |
| H37Rv_KO_CtpC | -0.773 | -3.363 |
| H37Rv_KO_CtpD | 0.23 | -1.93 |
| H37Rv_KO_Rv1272 | -1.34 | -3.612 |
| H37Rv_KO_SugABC | -0.248 | -1.509 |
| H37Rv_KO_MbtN | -1.168 | -0.692 |
| Trans05 | -1.39 | -3.217 |
| macrophage_unactivated | 0.672 | 2.108 |
| IL1 | 0.389 | -1.21 |
| Rapamycin | 0.338 | 0.35 |
| Tcell | 0.756 | 1.336 |
| GMCSF | 0.665 | 1.893 |
| IFNab | -0.36 | 2.095 |
| IFNg | 0.433 | -0.216 |
| IFNg_GMCSF1 | 0.606 | -2.614 |
| Rv1432_day32 | -1.119 | -1.304 |
| Rv1565c_day32 | -1.091 | -5.178 |
| secA2_input | 0.899 | 0.441 |
| delta_Rv3594 | -0.098 | 0.277 |
| delta_Rv3717 | -1.888 | 0.653 |
| delta_Rv3811 | -0.617 | -1.096 |
| delta_Rv0954 | 0.69 | 0.939 |
| PonA1 | 1.238 | 0.379 |
| EccD1_KO | 0.201 | 0.033 |
| EspI_KO | 0.479 | -1.492 |
| PE35_KO | 0.128 | -1.173 |
| PPE68_KO | 0.166 | -1.456 |
| glycerol2 | -0.254 | -0.68 |
| lignocerate | 0.335 | 0.537 |
| oleate | -0.176 | -0.688 |
| phosphatidylcholine | 0.634 | 0.27 |
| acetate | -0.246 | -0.369 |
| glucAc | -0.145 | -0.501 |
| Rv0950ko | 1.173 | -0.724 |
| Rv1096ko | 0.953 | 0.335 |
| Rv3684ko | 0.36 | -0.547 |
| delta_otsA_trehalose | 0.446 | 0.424 |