TnSeqCorr

Top 10 genes with highest correlation to Rv3197/-:

update plotcorrelationlink to info on gene
Rv1568/bioA (cc=0.7512) info on Rv1568/bioA
Rv0485/- (cc=0.7483) info on Rv0485/-
Rv3616c/espA (cc=0.7336) info on Rv3616c/espA
Rv3057c/- (cc=0.7309) info on Rv3057c/-
Rv3869/eccB1 (cc=0.7283) info on Rv3869/eccB1
Rv1493/mutB (cc=0.7252) info on Rv1493/mutB
Rv3870/eccCa1 (cc=0.7239) info on Rv3870/eccCa1
Rv1590/- (cc=0.7218) info on Rv1590/-
Rv1569/bioF1 (cc=0.721) info on Rv1569/bioF1
Rv3551/- (cc=0.7199) info on Rv3551/-

Correlation of Rv3197/- with Rv1568/bioA

Normalized LFCs for Rv3197/-:
(description and provenance of datasets)
Rv3197/-Rv1568/bioA
Fe_supp_jason_reseq

0.865

0.395

low_pH_jason_reseq

-1.295

-0.239

NO_jason_reseq

0.407

0.239

B6_jason_reseq

-1.729

-4.106

MHCII_jason_reseq

-1.339

-3.512

Isoniazid02

1.461

0.215

Rifampicin4

-1.424

0.401

Ethambutol3

0.062

-0.377

Meropenem3

1.488

-0.265

Vancomycin16

-0.759

0.127

Rv2680_day32

-1.588

-3.765

H37Rv_KO_MarP

0.938

-0.202

hypoxia_3wks

-0.754

0.427

hypoxia_6wks

-0.883

0.098

glycerol

-0.784

-6.0

cholesterol

-0.354

-4.527

AJ

-1.992

-6.0

Bibs02

-0.815

-5.898

Bibs02c

-2.495

-6.0

BL6

-1.298

-4.035

BL6a

-2.303

-6.0

BXD01

-2.047

-4.071

BXD010

-1.567

-4.003

BXD011

-1.241

-3.121

BXD03

-1.302

-3.185

BXD04

-1.917

-3.754

BXD05

-1.976

-3.771

BXD06

-2.157

-4.306

BXD07

-2.006

-4.328

BXD08

-1.852

-4.157

BXD09

-1.931

-4.533

CAST

-2.054

-5.642

CCcont

-0.78

-1.046

DS01

-2.483

-6.0

DS02

-1.336

-6.0

DS04

-1.753

-4.659

DS0c

-1.614

-6.0

GP01

0.024

-2.637

GP02

-0.025

-2.331

GP0c

-0.776

0.031

NOD

-0.952

-4.914

NZO

-2.319

-6.0

PWK

-1.684

-5.789

H37Rv_KO_CtpC

-0.773

-4.242

H37Rv_KO_CtpD

0.23

-2.771

H37Rv_KO_Rv1272

-1.34

-3.683

H37Rv_KO_SugABC

-0.248

-1.29

H37Rv_KO_MbtN

-1.168

-0.066

Trans05

-1.39

-3.755

macrophage_unactivated

0.672

1.471

IL1

0.389

-0.415

Rapamycin

0.338

0.598

Tcell

0.756

1.554

GMCSF

0.665

0.906

IFNab

-0.36

2.6

IFNg

0.433

-1.042

IFNg_GMCSF1

0.606

-0.547

Rv1432_day32

-1.119

-4.919

Rv1565c_day32

-1.091

-6.0

secA2_input

0.899

0.593

delta_Rv3594

-0.098

0.289

delta_Rv3717

-1.888

0.569

delta_Rv3811

-0.617

0.196

delta_Rv0954

0.69

0.979

PonA1

1.238

0.6

EccD1_KO

0.201

0.178

EspI_KO

0.479

-0.285

PE35_KO

0.128

-0.376

PPE68_KO

0.166

-0.685

glycerol2

-0.254

0.0

lignocerate

0.335

1.303

oleate

-0.176

0.0

phosphatidylcholine

0.634

0.819

acetate

-0.246

0.437

glucAc

-0.145

0.0

Rv0950ko

1.173

0.7

Rv1096ko

0.953

0.872

Rv3684ko

0.36

0.76

delta_otsA_trehalose

0.446

-0.65