Top 10 genes with highest correlation to Rv3117/cysA3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0815c/cysA2 | (cc=0.9716) | info on Rv0815c/cysA2 |
| Rv1538c/ansA | (cc=0.5622) | info on Rv1538c/ansA |
| Rv2949c/- | (cc=0.5261) | info on Rv2949c/- |
| Rv0916c/PE7 | (cc=0.502) | info on Rv0916c/PE7 |
| Rv0346c/ansP2 | (cc=0.4755) | info on Rv0346c/ansP2 |
| Rv3217c/- | (cc=0.4506) | info on Rv3217c/- |
| Rv2950c/fadD29 | (cc=0.4483) | info on Rv2950c/fadD29 |
| Rv1790/PPE27 | (cc=0.441) | info on Rv1790/PPE27 |
| Rv2082/- | (cc=0.4363) | info on Rv2082/- |
| Rv1087A/- | (cc=0.4309) | info on Rv1087A/- |
Correlation of Rv3117/cysA3 with Rv1087A/-
Normalized LFCs for Rv3117/cysA3:
(description and provenance of datasets)
| Rv3117/cysA3 | Rv1087A/- | |
| Fe_supp_jason_reseq | 0.246 | 0.453 |
| low_pH_jason_reseq | -0.361 | -1.086 |
| NO_jason_reseq | 1.26 | 0.123 |
| B6_jason_reseq | -0.31 | 1.213 |
| MHCII_jason_reseq | -0.652 | 1.116 |
| Isoniazid02 | -1.618 | 0.035 |
| Rifampicin4 | 0.387 | 0.398 |
| Ethambutol3 | 0.063 | -0.103 |
| Meropenem3 | -0.715 | -1.94 |
| Vancomycin16 | -0.345 | -0.875 |
| Rv2680_day32 | -0.053 | 0.296 |
| H37Rv_KO_MarP | -0.1 | 0.066 |
| hypoxia_3wks | -0.726 | -0.686 |
| hypoxia_6wks | -0.507 | -0.844 |
| glycerol | -2.765 | -1.915 |
| cholesterol | -2.069 | -1.713 |
| AJ | -0.627 | -0.182 |
| Bibs02 | -0.274 | 0.041 |
| Bibs02c | -0.702 | 0.115 |
| BL6 | -0.203 | -0.445 |
| BL6a | -0.495 | -0.099 |
| BXD01 | -0.392 | -0.927 |
| BXD010 | -0.291 | -0.156 |
| BXD011 | -0.18 | -0.253 |
| BXD03 | 0.323 | -0.731 |
| BXD04 | 0.11 | -0.476 |
| BXD05 | -0.414 | -0.178 |
| BXD06 | -0.295 | -1.182 |
| BXD07 | -0.474 | -0.407 |
| BXD08 | -0.451 | -0.761 |
| BXD09 | -0.371 | -0.564 |
| CAST | 0.012 | 0.22 |
| CCcont | 0.213 | -0.654 |
| DS01 | -1.013 | -0.38 |
| DS02 | -0.882 | 0.151 |
| DS04 | -0.447 | -0.389 |
| DS0c | 0.077 | -0.288 |
| GP01 | -0.79 | -1.407 |
| GP02 | -0.494 | -0.019 |
| GP0c | -0.333 | -1.673 |
| NOD | -0.675 | -0.677 |
| NZO | -0.676 | 0.351 |
| PWK | -0.163 | 0.233 |
| H37Rv_KO_CtpC | -0.164 | -0.031 |
| H37Rv_KO_CtpD | -0.098 | 0.673 |
| H37Rv_KO_Rv1272 | -0.052 | 0.166 |
| H37Rv_KO_SugABC | -0.354 | 0.715 |
| H37Rv_KO_MbtN | -0.384 | -0.102 |
| Trans05 | 0.085 | 0.132 |
| macrophage_unactivated | 0.123 | -0.578 |
| IL1 | -0.276 | -0.51 |
| Rapamycin | -0.565 | -1.111 |
| Tcell | 0.114 | -0.727 |
| GMCSF | -0.438 | -0.283 |
| IFNab | -0.517 | -1.246 |
| IFNg | -0.305 | -0.898 |
| IFNg_GMCSF1 | -0.28 | -0.314 |
| Rv1432_day32 | -0.158 | 0.447 |
| Rv1565c_day32 | -1.093 | 0.423 |
| secA2_input | 0.612 | -0.823 |
| delta_Rv3594 | 0.125 | 0.032 |
| delta_Rv3717 | 0.0 | -1.053 |
| delta_Rv3811 | 0.183 | -1.044 |
| delta_Rv0954 | -0.016 | -0.009 |
| PonA1 | -0.776 | -0.631 |
| EccD1_KO | 0.408 | 0.671 |
| EspI_KO | 1.144 | 0.873 |
| PE35_KO | 0.671 | 0.187 |
| PPE68_KO | 0.915 | -0.038 |
| glycerol2 | 0.57 | 0.581 |
| lignocerate | 0.442 | 0.592 |
| oleate | 0.282 | 0.296 |
| phosphatidylcholine | 0.518 | 0.769 |
| acetate | 0.522 | 0.326 |
| glucAc | 0.517 | 0.52 |
| Rv0950ko | 0.081 | 0.365 |
| Rv1096ko | -0.262 | -0.075 |
| Rv3684ko | -1.339 | -0.151 |
| delta_otsA_trehalose | -0.014 | -0.724 |