TnSeqCorr

Top 10 genes with highest correlation to Rv3117/cysA3:

update plotcorrelationlink to info on gene
Rv0815c/cysA2 (cc=0.9716) info on Rv0815c/cysA2
Rv1538c/ansA (cc=0.5622) info on Rv1538c/ansA
Rv2949c/- (cc=0.5261) info on Rv2949c/-
Rv0916c/PE7 (cc=0.502) info on Rv0916c/PE7
Rv0346c/ansP2 (cc=0.4755) info on Rv0346c/ansP2
Rv3217c/- (cc=0.4506) info on Rv3217c/-
Rv2950c/fadD29 (cc=0.4483) info on Rv2950c/fadD29
Rv1790/PPE27 (cc=0.441) info on Rv1790/PPE27
Rv2082/- (cc=0.4363) info on Rv2082/-
Rv1087A/- (cc=0.4309) info on Rv1087A/-

Correlation of Rv3117/cysA3 with Rv1790/PPE27

Normalized LFCs for Rv3117/cysA3:
(description and provenance of datasets)
Rv3117/cysA3Rv1790/PPE27
Fe_supp_jason_reseq

0.246

-0.36

low_pH_jason_reseq

-0.361

-1.364

NO_jason_reseq

1.26

0.664

B6_jason_reseq

-0.31

-1.212

MHCII_jason_reseq

-0.652

-1.733

Isoniazid02

-1.618

-0.148

Rifampicin4

0.387

0.349

Ethambutol3

0.063

0.238

Meropenem3

-0.715

1.151

Vancomycin16

-0.345

-0.586

Rv2680_day32

-0.053

0.027

H37Rv_KO_MarP

-0.1

0.01

hypoxia_3wks

-0.726

0.319

hypoxia_6wks

-0.507

-0.209

glycerol

-2.765

-0.983

cholesterol

-2.069

-1.986

AJ

-0.627

0.118

Bibs02

-0.274

-0.514

Bibs02c

-0.702

-1.102

BL6

-0.203

-0.609

BL6a

-0.495

-0.881

BXD01

-0.392

-0.438

BXD010

-0.291

-0.57

BXD011

-0.18

-0.458

BXD03

0.323

-0.157

BXD04

0.11

-0.441

BXD05

-0.414

0.143

BXD06

-0.295

-0.764

BXD07

-0.474

-0.029

BXD08

-0.451

-0.338

BXD09

-0.371

-0.534

CAST

0.012

-0.444

CCcont

0.213

-0.515

DS01

-1.013

-1.343

DS02

-0.882

-1.081

DS04

-0.447

-0.398

DS0c

0.077

-1.226

GP01

-0.79

0.544

GP02

-0.494

1.099

GP0c

-0.333

0.016

NOD

-0.675

-0.687

NZO

-0.676

-0.501

PWK

-0.163

-0.004

H37Rv_KO_CtpC

-0.164

-0.031

H37Rv_KO_CtpD

-0.098

0.061

H37Rv_KO_Rv1272

-0.052

0.189

H37Rv_KO_SugABC

-0.354

-0.115

H37Rv_KO_MbtN

-0.384

0.455

Trans05

0.085

0.611

macrophage_unactivated

0.123

0.145

IL1

-0.276

0.32

Rapamycin

-0.565

-0.288

Tcell

0.114

0.863

GMCSF

-0.438

1.135

IFNab

-0.517

-0.65

IFNg

-0.305

0.82

IFNg_GMCSF1

-0.28

0.559

Rv1432_day32

-0.158

0.372

Rv1565c_day32

-1.093

-1.579

secA2_input

0.612

0.246

delta_Rv3594

0.125

-0.298

delta_Rv3717

0.0

-0.526

delta_Rv3811

0.183

-0.251

delta_Rv0954

-0.016

-0.607

PonA1

-0.776

-0.526

EccD1_KO

0.408

0.257

EspI_KO

1.144

0.117

PE35_KO

0.671

0.251

PPE68_KO

0.915

0.058

glycerol2

0.57

0.398

lignocerate

0.442

-0.119

oleate

0.282

0.431

phosphatidylcholine

0.518

0.601

acetate

0.522

0.076

glucAc

0.517

0.225

Rv0950ko

0.081

0.507

Rv1096ko

-0.262

-0.621

Rv3684ko

-1.339

-0.377

delta_otsA_trehalose

-0.014

0.056