TnSeqCorr

Top 10 genes with highest correlation to Rv3117/cysA3:

update plotcorrelationlink to info on gene
Rv0815c/cysA2 (cc=0.9716) info on Rv0815c/cysA2
Rv1538c/ansA (cc=0.5622) info on Rv1538c/ansA
Rv2949c/- (cc=0.5261) info on Rv2949c/-
Rv0916c/PE7 (cc=0.502) info on Rv0916c/PE7
Rv0346c/ansP2 (cc=0.4755) info on Rv0346c/ansP2
Rv3217c/- (cc=0.4506) info on Rv3217c/-
Rv2950c/fadD29 (cc=0.4483) info on Rv2950c/fadD29
Rv1790/PPE27 (cc=0.441) info on Rv1790/PPE27
Rv2082/- (cc=0.4363) info on Rv2082/-
Rv1087A/- (cc=0.4309) info on Rv1087A/-

Correlation of Rv3117/cysA3 with Rv3217c/-

Normalized LFCs for Rv3117/cysA3:
(description and provenance of datasets)
Rv3117/cysA3Rv3217c/-
Fe_supp_jason_reseq

0.246

1.552

low_pH_jason_reseq

-0.361

0.915

NO_jason_reseq

1.26

-0.583

B6_jason_reseq

-0.31

3.158

MHCII_jason_reseq

-0.652

-1.442

Isoniazid02

-1.618

-0.419

Rifampicin4

0.387

0.338

Ethambutol3

0.063

0.015

Meropenem3

-0.715

0.393

Vancomycin16

-0.345

0.417

Rv2680_day32

-0.053

-2.096

H37Rv_KO_MarP

-0.1

0.151

hypoxia_3wks

-0.726

-2.333

hypoxia_6wks

-0.507

-0.451

glycerol

-2.765

-2.028

cholesterol

-2.069

-1.607

AJ

-0.627

-0.852

Bibs02

-0.274

-3.04

Bibs02c

-0.702

-0.749

BL6

-0.203

1.636

BL6a

-0.495

0.547

BXD01

-0.392

-1.47

BXD010

-0.291

0.088

BXD011

-0.18

0.133

BXD03

0.323

0.758

BXD04

0.11

-0.388

BXD05

-0.414

-0.61

BXD06

-0.295

-1.64

BXD07

-0.474

-1.73

BXD08

-0.451

-0.643

BXD09

-0.371

-0.847

CAST

0.012

0.614

CCcont

0.213

0.457

DS01

-1.013

-1.167

DS02

-0.882

-1.237

DS04

-0.447

-1.561

DS0c

0.077

-0.607

GP01

-0.79

1.169

GP02

-0.494

0.881

GP0c

-0.333

0.488

NOD

-0.675

-1.38

NZO

-0.676

-1.871

PWK

-0.163

-1.115

H37Rv_KO_CtpC

-0.164

0.848

H37Rv_KO_CtpD

-0.098

1.613

H37Rv_KO_Rv1272

-0.052

0.113

H37Rv_KO_SugABC

-0.354

2.251

H37Rv_KO_MbtN

-0.384

0.41

Trans05

0.085

0.976

macrophage_unactivated

0.123

-0.988

IL1

-0.276

-0.833

Rapamycin

-0.565

-1.132

Tcell

0.114

-0.811

GMCSF

-0.438

-1.663

IFNab

-0.517

0.106

IFNg

-0.305

-0.583

IFNg_GMCSF1

-0.28

-1.728

Rv1432_day32

-0.158

-0.608

Rv1565c_day32

-1.093

-1.275

secA2_input

0.612

-0.332

delta_Rv3594

0.125

1.253

delta_Rv3717

0.0

0.978

delta_Rv3811

0.183

1.254

delta_Rv0954

-0.016

1.215

PonA1

-0.776

1.588

EccD1_KO

0.408

1.408

EspI_KO

1.144

1.152

PE35_KO

0.671

-0.23

PPE68_KO

0.915

0.061

glycerol2

0.57

2.081

lignocerate

0.442

3.315

oleate

0.282

0.0

phosphatidylcholine

0.518

3.084

acetate

0.522

4.414

glucAc

0.517

4.344

Rv0950ko

0.081

0.211

Rv1096ko

-0.262

-0.808

Rv3684ko

-1.339

-0.626

delta_otsA_trehalose

-0.014

0.39