Top 10 genes with highest correlation to Rv3069/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2010/vapC15 | (cc=0.5865) | info on Rv2010/vapC15 |
| Rv2628/- | (cc=0.5602) | info on Rv2628/- |
| Rv0953c/- | (cc=0.5241) | info on Rv0953c/- |
| Rv1736c/narX | (cc=0.5103) | info on Rv1736c/narX |
| Rv1940/ribA1 | (cc=0.4978) | info on Rv1940/ribA1 |
| Rv3519/- | (cc=0.4877) | info on Rv3519/- |
| Rv1939/- | (cc=0.4849) | info on Rv1939/- |
| Rv1250/- | (cc=0.4655) | info on Rv1250/- |
| Rv2624c/- | (cc=0.4581) | info on Rv2624c/- |
| Rv1267c/embR | (cc=0.4539) | info on Rv1267c/embR |
Correlation of Rv3069/- with Rv1940/ribA1
Normalized LFCs for Rv3069/-:
(description and provenance of datasets)
| Rv3069/- | Rv1940/ribA1 | |
| Fe_supp_jason_reseq | -1.525 | -0.242 |
| low_pH_jason_reseq | 1.111 | -0.478 |
| NO_jason_reseq | 1.297 | 0.693 |
| B6_jason_reseq | 0.619 | 0.547 |
| MHCII_jason_reseq | 1.495 | 0.377 |
| Isoniazid02 | -1.008 | 0.34 |
| Rifampicin4 | -0.252 | -0.076 |
| Ethambutol3 | -0.755 | -0.173 |
| Meropenem3 | -0.182 | 0.137 |
| Vancomycin16 | -0.621 | -0.294 |
| Rv2680_day32 | -0.51 | 0.15 |
| H37Rv_KO_MarP | 0.192 | -0.395 |
| hypoxia_3wks | -0.072 | 0.319 |
| hypoxia_6wks | 0.177 | -0.054 |
| glycerol | 0.285 | -0.151 |
| cholesterol | -0.383 | 0.955 |
| AJ | 0.419 | 0.526 |
| Bibs02 | 0.0 | 0.97 |
| Bibs02c | 0.13 | -0.729 |
| BL6 | -0.323 | -1.835 |
| BL6a | -0.181 | -1.185 |
| BXD01 | -0.851 | -0.377 |
| BXD010 | -1.639 | -2.104 |
| BXD011 | -0.678 | -1.335 |
| BXD03 | -1.268 | -1.162 |
| BXD04 | -1.815 | -1.644 |
| BXD05 | -1.323 | -1.493 |
| BXD06 | -0.494 | -1.094 |
| BXD07 | -0.737 | -1.309 |
| BXD08 | -1.247 | -0.287 |
| BXD09 | -1.018 | -0.954 |
| CAST | 0.073 | 0.058 |
| CCcont | -1.539 | -2.403 |
| DS01 | -0.01 | -0.009 |
| DS02 | 0.2 | 0.145 |
| DS04 | 0.129 | 0.87 |
| DS0c | 0.416 | 0.793 |
| GP01 | 1.214 | -0.597 |
| GP02 | 1.65 | 1.119 |
| GP0c | 0.68 | -0.651 |
| NOD | -0.76 | 0.47 |
| NZO | 0.036 | 0.0 |
| PWK | 0.063 | -0.155 |
| H37Rv_KO_CtpC | -0.248 | -0.047 |
| H37Rv_KO_CtpD | -2.98 | -1.751 |
| H37Rv_KO_Rv1272 | -0.39 | -1.875 |
| H37Rv_KO_SugABC | -1.097 | -1.902 |
| H37Rv_KO_MbtN | -1.025 | -0.912 |
| Trans05 | 0.152 | 0.549 |
| macrophage_unactivated | 1.297 | -0.237 |
| IL1 | 1.536 | 0.279 |
| Rapamycin | 0.865 | 0.687 |
| Tcell | 1.87 | -0.414 |
| GMCSF | 0.449 | 1.555 |
| IFNab | 0.729 | 0.771 |
| IFNg | 0.171 | -0.064 |
| IFNg_GMCSF1 | 2.262 | 0.801 |
| Rv1432_day32 | 0.249 | -0.709 |
| Rv1565c_day32 | 1.652 | 0.014 |
| secA2_input | -1.565 | -0.102 |
| delta_Rv3594 | -0.968 | 0.223 |
| delta_Rv3717 | -0.396 | 0.433 |
| delta_Rv3811 | 0.079 | 0.314 |
| delta_Rv0954 | 0.738 | -0.141 |
| PonA1 | 0.299 | 0.731 |
| EccD1_KO | 1.799 | -0.477 |
| EspI_KO | 1.517 | -0.585 |
| PE35_KO | 2.252 | -0.079 |
| PPE68_KO | 1.987 | 0.186 |
| glycerol2 | 0.025 | 0.294 |
| lignocerate | -0.565 | -0.245 |
| oleate | 0.496 | 0.98 |
| phosphatidylcholine | 0.013 | 0.773 |
| acetate | -1.275 | -0.213 |
| glucAc | -1.298 | -1.081 |
| Rv0950ko | -0.274 | -0.736 |
| Rv1096ko | 0.872 | 0.63 |
| Rv3684ko | -1.618 | -0.498 |
| delta_otsA_trehalose | -0.087 | 0.345 |