TnSeqCorr

Top 10 genes with highest correlation to Rv3069/-:

update plotcorrelationlink to info on gene
Rv2010/vapC15 (cc=0.5865) info on Rv2010/vapC15
Rv2628/- (cc=0.5602) info on Rv2628/-
Rv0953c/- (cc=0.5241) info on Rv0953c/-
Rv1736c/narX (cc=0.5103) info on Rv1736c/narX
Rv1940/ribA1 (cc=0.4978) info on Rv1940/ribA1
Rv3519/- (cc=0.4877) info on Rv3519/-
Rv1939/- (cc=0.4849) info on Rv1939/-
Rv1250/- (cc=0.4655) info on Rv1250/-
Rv2624c/- (cc=0.4581) info on Rv2624c/-
Rv1267c/embR (cc=0.4539) info on Rv1267c/embR

Correlation of Rv3069/- with Rv1267c/embR

Normalized LFCs for Rv3069/-:
(description and provenance of datasets)
Rv3069/-Rv1267c/embR
Fe_supp_jason_reseq

-1.525

-0.406

low_pH_jason_reseq

1.111

-0.234

NO_jason_reseq

1.297

0.184

B6_jason_reseq

0.619

0.172

MHCII_jason_reseq

1.495

1.059

Isoniazid02

-1.008

-0.367

Rifampicin4

-0.252

-0.06

Ethambutol3

-0.755

-0.291

Meropenem3

-0.182

-0.195

Vancomycin16

-0.621

-0.369

Rv2680_day32

-0.51

-0.344

H37Rv_KO_MarP

0.192

0.683

hypoxia_3wks

-0.072

-0.566

hypoxia_6wks

0.177

-0.679

glycerol

0.285

-0.199

cholesterol

-0.383

-0.3

AJ

0.419

0.449

Bibs02

0.0

0.045

Bibs02c

0.13

0.917

BL6

-0.323

-0.098

BL6a

-0.181

0.58

BXD01

-0.851

-0.084

BXD010

-1.639

0.1

BXD011

-0.678

0.1

BXD03

-1.268

-0.725

BXD04

-1.815

0.77

BXD05

-1.323

-0.453

BXD06

-0.494

-0.077

BXD07

-0.737

0.365

BXD08

-1.247

-0.113

BXD09

-1.018

0.242

CAST

0.073

0.652

CCcont

-1.539

-0.221

DS01

-0.01

0.13

DS02

0.2

-0.041

DS04

0.129

0.446

DS0c

0.416

0.207

GP01

1.214

1.658

GP02

1.65

2.343

GP0c

0.68

1.044

NOD

-0.76

0.812

NZO

0.036

0.555

PWK

0.063

0.35

H37Rv_KO_CtpC

-0.248

-0.386

H37Rv_KO_CtpD

-2.98

-0.272

H37Rv_KO_Rv1272

-0.39

0.808

H37Rv_KO_SugABC

-1.097

-0.342

H37Rv_KO_MbtN

-1.025

-0.102

Trans05

0.152

0.54

macrophage_unactivated

1.297

0.395

IL1

1.536

0.486

Rapamycin

0.865

0.068

Tcell

1.87

0.984

GMCSF

0.449

-0.235

IFNab

0.729

-0.828

IFNg

0.171

0.946

IFNg_GMCSF1

2.262

0.694

Rv1432_day32

0.249

0.188

Rv1565c_day32

1.652

0.292

secA2_input

-1.565

-0.2

delta_Rv3594

-0.968

0.792

delta_Rv3717

-0.396

0.944

delta_Rv3811

0.079

0.208

delta_Rv0954

0.738

0.699

PonA1

0.299

0.278

EccD1_KO

1.799

1.125

EspI_KO

1.517

0.388

PE35_KO

2.252

1.03

PPE68_KO

1.987

0.518

glycerol2

0.025

0.273

lignocerate

-0.565

0.581

oleate

0.496

0.33

phosphatidylcholine

0.013

0.545

acetate

-1.275

0.51

glucAc

-1.298

0.045

Rv0950ko

-0.274

0.308

Rv1096ko

0.872

0.715

Rv3684ko

-1.618

0.475

delta_otsA_trehalose

-0.087

0.858