Top 10 genes with highest correlation to Rv2946c/pks1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2942/mmpL7 | (cc=0.6788) | info on Rv2942/mmpL7 |
| Rv2945c/lppX | (cc=0.6517) | info on Rv2945c/lppX |
| Rv2936/drrA | (cc=0.5864) | info on Rv2936/drrA |
| Rv1109c/- | (cc=0.5669) | info on Rv1109c/- |
| Rv3200c/- | (cc=0.5456) | info on Rv3200c/- |
| Rv2937/drrB | (cc=0.5327) | info on Rv2937/drrB |
| Rv2938/drrC | (cc=0.5147) | info on Rv2938/drrC |
| Rv2218/lipA | (cc=0.5122) | info on Rv2218/lipA |
| Rv2498c/citE | (cc=0.5091) | info on Rv2498c/citE |
| Rv1829/- | (cc=0.5077) | info on Rv1829/- |
Correlation of Rv2946c/pks1 with Rv1109c/-
Normalized LFCs for Rv2946c/pks1:
(description and provenance of datasets)
| Rv2946c/pks1 | Rv1109c/- | |
| Fe_supp_jason_reseq | 0.14 | 0.666 |
| low_pH_jason_reseq | -0.903 | -0.069 |
| NO_jason_reseq | -0.987 | -0.837 |
| B6_jason_reseq | -0.23 | -1.372 |
| MHCII_jason_reseq | -0.172 | -0.925 |
| Isoniazid02 | -0.068 | 0.837 |
| Rifampicin4 | -0.171 | -0.636 |
| Ethambutol3 | 0.705 | 0.952 |
| Meropenem3 | 0.303 | 0.329 |
| Vancomycin16 | -0.082 | -0.576 |
| Rv2680_day32 | -1.387 | -0.461 |
| H37Rv_KO_MarP | -0.703 | -0.742 |
| hypoxia_3wks | 1.168 | 0.195 |
| hypoxia_6wks | 1.247 | 0.136 |
| glycerol | 0.455 | 0.983 |
| cholesterol | 0.541 | 0.101 |
| AJ | -0.968 | -2.681 |
| Bibs02 | 0.162 | -1.534 |
| Bibs02c | 0.135 | 0.681 |
| BL6 | -0.149 | 0.261 |
| BL6a | 0.039 | 0.676 |
| BXD01 | 0.222 | 0.339 |
| BXD010 | -0.079 | -0.31 |
| BXD011 | 0.074 | 1.074 |
| BXD03 | 0.253 | -0.722 |
| BXD04 | 0.486 | 0.409 |
| BXD05 | -0.083 | -0.671 |
| BXD06 | 0.009 | -0.229 |
| BXD07 | 0.036 | 0.272 |
| BXD08 | 0.473 | -0.029 |
| BXD09 | -0.047 | 0.189 |
| CAST | -1.078 | -2.611 |
| CCcont | 0.329 | 0.517 |
| DS01 | 0.015 | -0.347 |
| DS02 | -0.358 | 0.334 |
| DS04 | 0.298 | -1.448 |
| DS0c | -0.291 | -1.106 |
| GP01 | 0.518 | -0.426 |
| GP02 | -0.051 | -0.711 |
| GP0c | 0.399 | -0.268 |
| NOD | -1.245 | -2.319 |
| NZO | -1.039 | -1.946 |
| PWK | -0.838 | -2.693 |
| H37Rv_KO_CtpC | -0.181 | 0.091 |
| H37Rv_KO_CtpD | 0.05 | 1.105 |
| H37Rv_KO_Rv1272 | -0.418 | -0.608 |
| H37Rv_KO_SugABC | 0.841 | 0.393 |
| H37Rv_KO_MbtN | 0.494 | 0.285 |
| Trans05 | -0.155 | -0.353 |
| macrophage_unactivated | 0.259 | 1.25 |
| IL1 | 0.43 | 1.258 |
| Rapamycin | 0.528 | 0.506 |
| Tcell | 0.694 | 0.668 |
| GMCSF | 0.177 | 0.177 |
| IFNab | 0.877 | 0.599 |
| IFNg | -0.061 | 0.369 |
| IFNg_GMCSF1 | -0.025 | -0.559 |
| Rv1432_day32 | -0.947 | -2.095 |
| Rv1565c_day32 | -0.253 | -2.199 |
| secA2_input | -0.39 | 1.035 |
| delta_Rv3594 | 0.639 | 1.361 |
| delta_Rv3717 | 0.094 | 0.148 |
| delta_Rv3811 | 0.634 | 0.271 |
| delta_Rv0954 | 0.592 | 1.585 |
| PonA1 | 0.248 | 1.165 |
| EccD1_KO | -0.214 | 1.276 |
| EspI_KO | 0.325 | 0.234 |
| PE35_KO | -0.053 | 0.335 |
| PPE68_KO | -0.029 | 1.241 |
| glycerol2 | 0.0 | 0.154 |
| lignocerate | -0.195 | 0.024 |
| oleate | 0.121 | -0.295 |
| phosphatidylcholine | 0.041 | 0.567 |
| acetate | -0.564 | -0.263 |
| glucAc | -0.461 | -0.264 |
| Rv0950ko | 0.181 | 0.645 |
| Rv1096ko | 0.027 | 0.799 |
| Rv3684ko | -0.354 | -0.236 |
| delta_otsA_trehalose | -0.527 | 1.439 |