Top 10 genes with highest correlation to Rv2587c/secD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2583c/relA | (cc=0.5972) | info on Rv2583c/relA |
| Rv2060/- | (cc=0.561) | info on Rv2060/- |
| Rv3540c/ltp2 | (cc=0.5498) | info on Rv3540c/ltp2 |
| Rv3224A/- | (cc=0.5371) | info on Rv3224A/- |
| Rv3550/echA20 | (cc=0.5301) | info on Rv3550/echA20 |
| Rv2019/- | (cc=0.5253) | info on Rv2019/- |
| Rv1027c/kdpE | (cc=0.5239) | info on Rv1027c/kdpE |
| Rv1590/- | (cc=0.5139) | info on Rv1590/- |
| Rv1852/ureG | (cc=0.5131) | info on Rv1852/ureG |
| Rv3874/esxB | (cc=0.5123) | info on Rv3874/esxB |
Correlation of Rv2587c/secD with Rv3540c/ltp2
Normalized LFCs for Rv2587c/secD:
(description and provenance of datasets)
| Rv2587c/secD | Rv3540c/ltp2 | |
| Fe_supp_jason_reseq | 1.029 | -0.218 |
| low_pH_jason_reseq | -1.158 | 0.979 |
| NO_jason_reseq | 1.089 | -0.176 |
| B6_jason_reseq | -1.035 | -2.219 |
| MHCII_jason_reseq | -1.046 | -1.719 |
| Isoniazid02 | 1.924 | 2.103 |
| Rifampicin4 | -0.252 | -0.171 |
| Ethambutol3 | 0.302 | 2.831 |
| Meropenem3 | -1.695 | -0.236 |
| Vancomycin16 | -0.796 | -0.618 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | -0.825 | -0.169 |
| hypoxia_3wks | -0.459 | -0.132 |
| hypoxia_6wks | -0.24 | -0.069 |
| glycerol | -0.607 | 1.065 |
| cholesterol | -0.435 | -1.761 |
| AJ | -0.698 | -2.82 |
| Bibs02 | -0.898 | -2.223 |
| Bibs02c | -0.82 | -1.97 |
| BL6 | 0.225 | -0.752 |
| BL6a | -0.595 | -2.03 |
| BXD01 | -0.182 | -1.227 |
| BXD010 | -0.629 | -1.107 |
| BXD011 | -0.383 | -0.042 |
| BXD03 | -0.664 | 0.417 |
| BXD04 | -0.607 | -1.38 |
| BXD05 | -0.527 | -1.38 |
| BXD06 | -0.29 | -1.623 |
| BXD07 | -0.543 | -1.197 |
| BXD08 | -0.521 | -1.363 |
| BXD09 | -0.196 | -1.44 |
| CAST | -0.903 | -2.571 |
| CCcont | 0.567 | 0.757 |
| DS01 | -1.16 | -2.871 |
| DS02 | -1.068 | -2.644 |
| DS04 | -0.953 | -1.989 |
| DS0c | -1.065 | -2.637 |
| GP01 | -0.387 | -1.102 |
| GP02 | -0.409 | -0.929 |
| GP0c | 0.082 | 0.785 |
| NOD | -0.88 | -1.351 |
| NZO | -0.98 | -2.425 |
| PWK | -0.769 | -2.384 |
| H37Rv_KO_CtpC | -0.637 | -1.813 |
| H37Rv_KO_CtpD | -0.085 | -1.095 |
| H37Rv_KO_Rv1272 | 1.557 | -1.022 |
| H37Rv_KO_SugABC | -0.487 | -1.106 |
| H37Rv_KO_MbtN | -0.404 | -1.056 |
| Trans05 | -0.393 | -0.512 |
| macrophage_unactivated | 0.947 | -0.83 |
| IL1 | 0.611 | -0.451 |
| Rapamycin | -0.353 | 0.0 |
| Tcell | 0.349 | -3.584 |
| GMCSF | -1.001 | 0.246 |
| IFNab | 0.0 | 2.316 |
| IFNg | 0.286 | 1.013 |
| IFNg_GMCSF1 | -0.361 | -1.405 |
| Rv1432_day32 | 0.0 | -0.18 |
| Rv1565c_day32 | -0.218 | -0.766 |
| secA2_input | -1.868 | 1.249 |
| delta_Rv3594 | 1.155 | -0.225 |
| delta_Rv3717 | 0.578 | 0.37 |
| delta_Rv3811 | 0.0 | 0.437 |
| delta_Rv0954 | 0.0 | 0.652 |
| PonA1 | -0.223 | 0.693 |
| EccD1_KO | 1.289 | 0.635 |
| EspI_KO | 0.248 | 0.918 |
| PE35_KO | 0.254 | 0.292 |
| PPE68_KO | 0.278 | 0.32 |
| glycerol2 | 0.82 | 1.292 |
| lignocerate | 1.386 | 1.628 |
| oleate | 0.0 | -1.117 |
| phosphatidylcholine | 1.297 | 0.854 |
| acetate | 2.292 | 2.068 |
| glucAc | 2.14 | 2.286 |
| Rv0950ko | 0.793 | 0.093 |
| Rv1096ko | 1.252 | 1.3 |
| Rv3684ko | 0.593 | 0.845 |
| delta_otsA_trehalose | 0.965 | 0.327 |