Top 10 genes with highest correlation to Rv2587c/secD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2583c/relA | (cc=0.5972) | info on Rv2583c/relA |
| Rv2060/- | (cc=0.561) | info on Rv2060/- |
| Rv3540c/ltp2 | (cc=0.5498) | info on Rv3540c/ltp2 |
| Rv3224A/- | (cc=0.5371) | info on Rv3224A/- |
| Rv3550/echA20 | (cc=0.5301) | info on Rv3550/echA20 |
| Rv2019/- | (cc=0.5253) | info on Rv2019/- |
| Rv1027c/kdpE | (cc=0.5239) | info on Rv1027c/kdpE |
| Rv1590/- | (cc=0.5139) | info on Rv1590/- |
| Rv1852/ureG | (cc=0.5131) | info on Rv1852/ureG |
| Rv3874/esxB | (cc=0.5123) | info on Rv3874/esxB |
Correlation of Rv2587c/secD with Rv3224A/-
Normalized LFCs for Rv2587c/secD:
(description and provenance of datasets)
| Rv2587c/secD | Rv3224A/- | |
| Fe_supp_jason_reseq | 1.029 | 2.797 |
| low_pH_jason_reseq | -1.158 | -0.599 |
| NO_jason_reseq | 1.089 | -1.725 |
| B6_jason_reseq | -1.035 | -2.259 |
| MHCII_jason_reseq | -1.046 | -1.515 |
| Isoniazid02 | 1.924 | 0.358 |
| Rifampicin4 | -0.252 | -1.013 |
| Ethambutol3 | 0.302 | -0.423 |
| Meropenem3 | -1.695 | -0.025 |
| Vancomycin16 | -0.796 | 0.0 |
| Rv2680_day32 | 0.0 | 2.963 |
| H37Rv_KO_MarP | -0.825 | 0.035 |
| hypoxia_3wks | -0.459 | -1.758 |
| hypoxia_6wks | -0.24 | -1.142 |
| glycerol | -0.607 | -1.769 |
| cholesterol | -0.435 | 0.329 |
| AJ | -0.698 | -1.153 |
| Bibs02 | -0.898 | -1.999 |
| Bibs02c | -0.82 | -1.238 |
| BL6 | 0.225 | 1.287 |
| BL6a | -0.595 | -0.366 |
| BXD01 | -0.182 | 1.298 |
| BXD010 | -0.629 | -0.074 |
| BXD011 | -0.383 | 0.2 |
| BXD03 | -0.664 | 1.017 |
| BXD04 | -0.607 | -1.167 |
| BXD05 | -0.527 | -0.249 |
| BXD06 | -0.29 | -0.293 |
| BXD07 | -0.543 | 0.983 |
| BXD08 | -0.521 | 0.846 |
| BXD09 | -0.196 | -0.213 |
| CAST | -0.903 | -1.482 |
| CCcont | 0.567 | 2.065 |
| DS01 | -1.16 | 0.932 |
| DS02 | -1.068 | -2.757 |
| DS04 | -0.953 | 0.84 |
| DS0c | -1.065 | -2.203 |
| GP01 | -0.387 | 1.272 |
| GP02 | -0.409 | -0.91 |
| GP0c | 0.082 | 1.505 |
| NOD | -0.88 | -1.826 |
| NZO | -0.98 | -2.728 |
| PWK | -0.769 | -1.718 |
| H37Rv_KO_CtpC | -0.637 | -2.222 |
| H37Rv_KO_CtpD | -0.085 | 2.993 |
| H37Rv_KO_Rv1272 | 1.557 | 1.746 |
| H37Rv_KO_SugABC | -0.487 | -1.083 |
| H37Rv_KO_MbtN | -0.404 | -1.127 |
| Trans05 | -0.393 | -0.649 |
| macrophage_unactivated | 0.947 | 0.0 |
| IL1 | 0.611 | -4.108 |
| Rapamycin | -0.353 | -1.182 |
| Tcell | 0.349 | 1.147 |
| GMCSF | -1.001 | 0.457 |
| IFNab | 0.0 | 2.038 |
| IFNg | 0.286 | 0.676 |
| IFNg_GMCSF1 | -0.361 | -0.619 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -0.218 | -1.403 |
| secA2_input | -1.868 | 0.16 |
| delta_Rv3594 | 1.155 | 3.02 |
| delta_Rv3717 | 0.578 | 0.405 |
| delta_Rv3811 | 0.0 | 3.359 |
| delta_Rv0954 | 0.0 | -1.742 |
| PonA1 | -0.223 | -1.714 |
| EccD1_KO | 1.289 | 0.076 |
| EspI_KO | 0.248 | -2.125 |
| PE35_KO | 0.254 | -0.353 |
| PPE68_KO | 0.278 | -0.387 |
| glycerol2 | 0.82 | 3.333 |
| lignocerate | 1.386 | 3.899 |
| oleate | 0.0 | 0.0 |
| phosphatidylcholine | 1.297 | 3.332 |
| acetate | 2.292 | 4.833 |
| glucAc | 2.14 | 3.575 |
| Rv0950ko | 0.793 | 3.015 |
| Rv1096ko | 1.252 | 2.91 |
| Rv3684ko | 0.593 | 3.331 |
| delta_otsA_trehalose | 0.965 | -2.329 |