Top 10 genes with highest correlation to Rv2587c/secD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2583c/relA | (cc=0.5972) | info on Rv2583c/relA |
| Rv2060/- | (cc=0.561) | info on Rv2060/- |
| Rv3540c/ltp2 | (cc=0.5498) | info on Rv3540c/ltp2 |
| Rv3224A/- | (cc=0.5371) | info on Rv3224A/- |
| Rv3550/echA20 | (cc=0.5301) | info on Rv3550/echA20 |
| Rv2019/- | (cc=0.5253) | info on Rv2019/- |
| Rv1027c/kdpE | (cc=0.5239) | info on Rv1027c/kdpE |
| Rv1590/- | (cc=0.5139) | info on Rv1590/- |
| Rv1852/ureG | (cc=0.5131) | info on Rv1852/ureG |
| Rv3874/esxB | (cc=0.5123) | info on Rv3874/esxB |
Correlation of Rv2587c/secD with Rv2019/-
Normalized LFCs for Rv2587c/secD:
(description and provenance of datasets)
| Rv2587c/secD | Rv2019/- | |
| Fe_supp_jason_reseq | 1.029 | 0.44 |
| low_pH_jason_reseq | -1.158 | -0.156 |
| NO_jason_reseq | 1.089 | -0.013 |
| B6_jason_reseq | -1.035 | 0.823 |
| MHCII_jason_reseq | -1.046 | 0.456 |
| Isoniazid02 | 1.924 | 0.118 |
| Rifampicin4 | -0.252 | 0.325 |
| Ethambutol3 | 0.302 | -0.124 |
| Meropenem3 | -1.695 | 0.059 |
| Vancomycin16 | -0.796 | 0.273 |
| Rv2680_day32 | 0.0 | 0.594 |
| H37Rv_KO_MarP | -0.825 | -0.807 |
| hypoxia_3wks | -0.459 | -0.845 |
| hypoxia_6wks | -0.24 | 0.578 |
| glycerol | -0.607 | -0.512 |
| cholesterol | -0.435 | 0.244 |
| AJ | -0.698 | -0.373 |
| Bibs02 | -0.898 | -0.021 |
| Bibs02c | -0.82 | -0.635 |
| BL6 | 0.225 | -0.386 |
| BL6a | -0.595 | -0.093 |
| BXD01 | -0.182 | -0.498 |
| BXD010 | -0.629 | 0.09 |
| BXD011 | -0.383 | 0.606 |
| BXD03 | -0.664 | -0.532 |
| BXD04 | -0.607 | -0.494 |
| BXD05 | -0.527 | 0.324 |
| BXD06 | -0.29 | 0.065 |
| BXD07 | -0.543 | -0.054 |
| BXD08 | -0.521 | -0.214 |
| BXD09 | -0.196 | 0.063 |
| CAST | -0.903 | -0.584 |
| CCcont | 0.567 | 0.671 |
| DS01 | -1.16 | 0.474 |
| DS02 | -1.068 | 0.517 |
| DS04 | -0.953 | 0.822 |
| DS0c | -1.065 | -0.702 |
| GP01 | -0.387 | -0.629 |
| GP02 | -0.409 | -0.134 |
| GP0c | 0.082 | 0.009 |
| NOD | -0.88 | 0.068 |
| NZO | -0.98 | -0.046 |
| PWK | -0.769 | 0.044 |
| H37Rv_KO_CtpC | -0.637 | 0.085 |
| H37Rv_KO_CtpD | -0.085 | -0.333 |
| H37Rv_KO_Rv1272 | 1.557 | 1.223 |
| H37Rv_KO_SugABC | -0.487 | 0.041 |
| H37Rv_KO_MbtN | -0.404 | 1.693 |
| Trans05 | -0.393 | 1.087 |
| macrophage_unactivated | 0.947 | -0.83 |
| IL1 | 0.611 | -0.222 |
| Rapamycin | -0.353 | 0.187 |
| Tcell | 0.349 | 0.182 |
| GMCSF | -1.001 | 0.121 |
| IFNab | 0.0 | 0.632 |
| IFNg | 0.286 | -0.444 |
| IFNg_GMCSF1 | -0.361 | -0.468 |
| Rv1432_day32 | 0.0 | 0.055 |
| Rv1565c_day32 | -0.218 | 0.57 |
| secA2_input | -1.868 | -1.367 |
| delta_Rv3594 | 1.155 | 0.838 |
| delta_Rv3717 | 0.578 | -0.186 |
| delta_Rv3811 | 0.0 | 0.697 |
| delta_Rv0954 | 0.0 | -0.151 |
| PonA1 | -0.223 | -0.492 |
| EccD1_KO | 1.289 | 0.927 |
| EspI_KO | 0.248 | 1.03 |
| PE35_KO | 0.254 | 1.52 |
| PPE68_KO | 0.278 | 1.369 |
| glycerol2 | 0.82 | 2.299 |
| lignocerate | 1.386 | 2.763 |
| oleate | 0.0 | -0.062 |
| phosphatidylcholine | 1.297 | 2.346 |
| acetate | 2.292 | 3.72 |
| glucAc | 2.14 | 2.122 |
| Rv0950ko | 0.793 | 0.748 |
| Rv1096ko | 1.252 | -0.461 |
| Rv3684ko | 0.593 | -0.196 |
| delta_otsA_trehalose | 0.965 | 0.21 |