Top 10 genes with highest correlation to Rv2086/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0443/- | (cc=0.4875) | info on Rv0443/- |
| Rv3197A/whiB7 | (cc=0.4797) | info on Rv3197A/whiB7 |
| Rv1686c/- | (cc=0.4743) | info on Rv1686c/- |
| Rv1880c/cyp140 | (cc=0.4637) | info on Rv1880c/cyp140 |
| Rv1737c/narK2 | (cc=0.44) | info on Rv1737c/narK2 |
| Rv1263/amiB2 | (cc=0.4343) | info on Rv1263/amiB2 |
| Rv1960c/parD1 | (cc=0.424) | info on Rv1960c/parD1 |
| Rv1087/PE_PGRS21 | (cc=0.4232) | info on Rv1087/PE_PGRS21 |
| Rv1818c/PE_PGRS33 | (cc=0.4221) | info on Rv1818c/PE_PGRS33 |
| Rv0649/fabD2 | (cc=0.4211) | info on Rv0649/fabD2 |
Correlation of Rv2086/- with Rv3197A/whiB7
Normalized LFCs for Rv2086/-:
(description and provenance of datasets)
| Rv2086/- | Rv3197A/whiB7 | |
| Fe_supp_jason_reseq | -3.309 | -2.31 |
| low_pH_jason_reseq | -0.694 | -0.154 |
| NO_jason_reseq | -0.286 | -0.389 |
| B6_jason_reseq | -1.244 | 0.454 |
| MHCII_jason_reseq | -1.023 | -0.275 |
| Isoniazid02 | 0.368 | 2.123 |
| Rifampicin4 | 0.054 | -0.325 |
| Ethambutol3 | 0.406 | 0.207 |
| Meropenem3 | -0.428 | -0.231 |
| Vancomycin16 | 0.398 | -0.613 |
| Rv2680_day32 | 2.066 | 1.728 |
| H37Rv_KO_MarP | -0.409 | 0.988 |
| hypoxia_3wks | -1.049 | -1.412 |
| hypoxia_6wks | -0.616 | -2.41 |
| glycerol | -0.607 | 0.812 |
| cholesterol | 0.435 | 0.86 |
| AJ | -0.644 | -0.303 |
| Bibs02 | -0.065 | 1.477 |
| Bibs02c | -0.58 | -0.879 |
| BL6 | -1.093 | -0.103 |
| BL6a | -1.505 | -1.537 |
| BXD01 | -0.221 | 0.651 |
| BXD010 | -0.76 | -1.758 |
| BXD011 | -0.353 | -1.587 |
| BXD03 | -1.701 | -0.932 |
| BXD04 | 0.063 | -0.112 |
| BXD05 | -1.072 | -0.965 |
| BXD06 | -0.922 | -2.245 |
| BXD07 | -0.517 | -1.57 |
| BXD08 | 0.067 | -2.825 |
| BXD09 | -0.596 | -2.088 |
| CAST | 1.003 | -1.286 |
| CCcont | -0.194 | -0.548 |
| DS01 | -0.71 | 0.149 |
| DS02 | -2.28 | -3.738 |
| DS04 | 1.154 | -0.693 |
| DS0c | 0.0 | -0.866 |
| GP01 | 0.548 | 0.176 |
| GP02 | 1.721 | 0.84 |
| GP0c | 1.753 | -0.451 |
| NOD | 0.586 | -0.368 |
| NZO | -0.952 | -0.029 |
| PWK | 1.006 | 0.163 |
| H37Rv_KO_CtpC | 0.055 | -0.424 |
| H37Rv_KO_CtpD | -1.75 | -0.284 |
| H37Rv_KO_Rv1272 | 0.598 | -0.303 |
| H37Rv_KO_SugABC | -1.583 | 1.056 |
| H37Rv_KO_MbtN | -0.154 | -0.278 |
| Trans05 | 0.584 | 0.143 |
| macrophage_unactivated | -0.805 | 0.66 |
| IL1 | -1.51 | -2.346 |
| Rapamycin | -2.725 | -1.946 |
| Tcell | 0.124 | -0.671 |
| GMCSF | 1.296 | 1.281 |
| IFNab | -0.632 | -0.302 |
| IFNg | -1.513 | -0.551 |
| IFNg_GMCSF1 | -1.103 | -1.405 |
| Rv1432_day32 | 1.269 | 0.18 |
| Rv1565c_day32 | 0.0 | 0.528 |
| secA2_input | -0.875 | -0.681 |
| delta_Rv3594 | -0.644 | -1.26 |
| delta_Rv3717 | -0.849 | -0.057 |
| delta_Rv3811 | 0.125 | -0.854 |
| delta_Rv0954 | -1.226 | -0.072 |
| PonA1 | -0.568 | -0.133 |
| EccD1_KO | 0.224 | -0.355 |
| EspI_KO | -0.821 | -0.69 |
| PE35_KO | 0.198 | 0.452 |
| PPE68_KO | 0.269 | 1.133 |
| glycerol2 | 0.349 | 2.409 |
| lignocerate | 1.062 | 3.184 |
| oleate | -0.38 | -0.829 |
| phosphatidylcholine | 0.381 | 2.648 |
| acetate | 0.667 | 3.694 |
| glucAc | 1.062 | 2.829 |
| Rv0950ko | 0.865 | -0.311 |
| Rv1096ko | 0.986 | -2.753 |
| Rv3684ko | -1.605 | -1.85 |
| delta_otsA_trehalose | 3.188 | 0.742 |