Top 10 genes with highest correlation to Rv2086/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0443/- | (cc=0.4875) | info on Rv0443/- |
| Rv3197A/whiB7 | (cc=0.4797) | info on Rv3197A/whiB7 |
| Rv1686c/- | (cc=0.4743) | info on Rv1686c/- |
| Rv1880c/cyp140 | (cc=0.4637) | info on Rv1880c/cyp140 |
| Rv1737c/narK2 | (cc=0.44) | info on Rv1737c/narK2 |
| Rv1263/amiB2 | (cc=0.4343) | info on Rv1263/amiB2 |
| Rv1960c/parD1 | (cc=0.424) | info on Rv1960c/parD1 |
| Rv1087/PE_PGRS21 | (cc=0.4232) | info on Rv1087/PE_PGRS21 |
| Rv1818c/PE_PGRS33 | (cc=0.4221) | info on Rv1818c/PE_PGRS33 |
| Rv0649/fabD2 | (cc=0.4211) | info on Rv0649/fabD2 |
Correlation of Rv2086/- with Rv1880c/cyp140
Normalized LFCs for Rv2086/-:
(description and provenance of datasets)
| Rv2086/- | Rv1880c/cyp140 | |
| Fe_supp_jason_reseq | -3.309 | -0.706 |
| low_pH_jason_reseq | -0.694 | -0.391 |
| NO_jason_reseq | -0.286 | 0.084 |
| B6_jason_reseq | -1.244 | -0.111 |
| MHCII_jason_reseq | -1.023 | 0.084 |
| Isoniazid02 | 0.368 | 0.866 |
| Rifampicin4 | 0.054 | -0.533 |
| Ethambutol3 | 0.406 | 0.652 |
| Meropenem3 | -0.428 | 0.491 |
| Vancomycin16 | 0.398 | -0.05 |
| Rv2680_day32 | 2.066 | 0.843 |
| H37Rv_KO_MarP | -0.409 | -0.464 |
| hypoxia_3wks | -1.049 | -0.319 |
| hypoxia_6wks | -0.616 | 0.0 |
| glycerol | -0.607 | -0.456 |
| cholesterol | 0.435 | 0.304 |
| AJ | -0.644 | -0.203 |
| Bibs02 | -0.065 | 0.634 |
| Bibs02c | -0.58 | -0.15 |
| BL6 | -1.093 | -0.613 |
| BL6a | -1.505 | -0.748 |
| BXD01 | -0.221 | -0.52 |
| BXD010 | -0.76 | -0.243 |
| BXD011 | -0.353 | -0.058 |
| BXD03 | -1.701 | -0.763 |
| BXD04 | 0.063 | -0.177 |
| BXD05 | -1.072 | -0.007 |
| BXD06 | -0.922 | -0.403 |
| BXD07 | -0.517 | -0.734 |
| BXD08 | 0.067 | -0.42 |
| BXD09 | -0.596 | -0.829 |
| CAST | 1.003 | 0.259 |
| CCcont | -0.194 | -0.744 |
| DS01 | -0.71 | -0.351 |
| DS02 | -2.28 | -0.614 |
| DS04 | 1.154 | -0.535 |
| DS0c | 0.0 | -0.121 |
| GP01 | 0.548 | -0.423 |
| GP02 | 1.721 | -0.115 |
| GP0c | 1.753 | -0.789 |
| NOD | 0.586 | 0.407 |
| NZO | -0.952 | 0.215 |
| PWK | 1.006 | 0.141 |
| H37Rv_KO_CtpC | 0.055 | -0.903 |
| H37Rv_KO_CtpD | -1.75 | -0.506 |
| H37Rv_KO_Rv1272 | 0.598 | 0.208 |
| H37Rv_KO_SugABC | -1.583 | -0.763 |
| H37Rv_KO_MbtN | -0.154 | -1.618 |
| Trans05 | 0.584 | -0.287 |
| macrophage_unactivated | -0.805 | -1.102 |
| IL1 | -1.51 | -0.255 |
| Rapamycin | -2.725 | -0.519 |
| Tcell | 0.124 | -0.28 |
| GMCSF | 1.296 | -0.021 |
| IFNab | -0.632 | -0.481 |
| IFNg | -1.513 | -0.684 |
| IFNg_GMCSF1 | -1.103 | -0.189 |
| Rv1432_day32 | 1.269 | -0.175 |
| Rv1565c_day32 | 0.0 | 0.663 |
| secA2_input | -0.875 | -0.454 |
| delta_Rv3594 | -0.644 | 0.124 |
| delta_Rv3717 | -0.849 | -0.41 |
| delta_Rv3811 | 0.125 | -0.012 |
| delta_Rv0954 | -1.226 | 0.032 |
| PonA1 | -0.568 | 0.057 |
| EccD1_KO | 0.224 | 0.582 |
| EspI_KO | -0.821 | 0.482 |
| PE35_KO | 0.198 | 0.63 |
| PPE68_KO | 0.269 | 0.464 |
| glycerol2 | 0.349 | 1.843 |
| lignocerate | 1.062 | 0.972 |
| oleate | -0.38 | 0.418 |
| phosphatidylcholine | 0.381 | 1.036 |
| acetate | 0.667 | 0.49 |
| glucAc | 1.062 | 0.36 |
| Rv0950ko | 0.865 | 0.709 |
| Rv1096ko | 0.986 | 0.241 |
| Rv3684ko | -1.605 | 0.196 |
| delta_otsA_trehalose | 3.188 | 1.179 |