TnSeqCorr

Top 10 genes with highest correlation to Rv2086/-:

update plotcorrelationlink to info on gene
Rv0443/- (cc=0.4875) info on Rv0443/-
Rv3197A/whiB7 (cc=0.4797) info on Rv3197A/whiB7
Rv1686c/- (cc=0.4743) info on Rv1686c/-
Rv1880c/cyp140 (cc=0.4637) info on Rv1880c/cyp140
Rv1737c/narK2 (cc=0.44) info on Rv1737c/narK2
Rv1263/amiB2 (cc=0.4343) info on Rv1263/amiB2
Rv1960c/parD1 (cc=0.424) info on Rv1960c/parD1
Rv1087/PE_PGRS21 (cc=0.4232) info on Rv1087/PE_PGRS21
Rv1818c/PE_PGRS33 (cc=0.4221) info on Rv1818c/PE_PGRS33
Rv0649/fabD2 (cc=0.4211) info on Rv0649/fabD2

Correlation of Rv2086/- with Rv0649/fabD2

Normalized LFCs for Rv2086/-:
(description and provenance of datasets)
Rv2086/-Rv0649/fabD2
Fe_supp_jason_reseq

-3.309

-1.773

low_pH_jason_reseq

-0.694

-2.946

NO_jason_reseq

-0.286

-2.444

B6_jason_reseq

-1.244

-0.889

MHCII_jason_reseq

-1.023

0.58

Isoniazid02

0.368

3.067

Rifampicin4

0.054

0.772

Ethambutol3

0.406

1.058

Meropenem3

-0.428

0.952

Vancomycin16

0.398

-0.135

Rv2680_day32

2.066

2.793

H37Rv_KO_MarP

-0.409

-0.865

hypoxia_3wks

-1.049

-2.588

hypoxia_6wks

-0.616

-2.658

glycerol

-0.607

1.837

cholesterol

0.435

1.356

AJ

-0.644

0.647

Bibs02

-0.065

3.449

Bibs02c

-0.58

1.904

BL6

-1.093

-1.637

BL6a

-1.505

-0.27

BXD01

-0.221

0.929

BXD010

-0.76

-0.056

BXD011

-0.353

-0.745

BXD03

-1.701

0.639

BXD04

0.063

-0.11

BXD05

-1.072

-0.947

BXD06

-0.922

-1.182

BXD07

-0.517

-0.617

BXD08

0.067

-1.113

BXD09

-0.596

-0.58

CAST

1.003

0.926

CCcont

-0.194

0.236

DS01

-0.71

-0.44

DS02

-2.28

1.356

DS04

1.154

0.082

DS0c

0.0

-0.094

GP01

0.548

1.694

GP02

1.721

1.051

GP0c

1.753

0.465

NOD

0.586

0.272

NZO

-0.952

-0.824

PWK

1.006

-1.38

H37Rv_KO_CtpC

0.055

-1.522

H37Rv_KO_CtpD

-1.75

-0.65

H37Rv_KO_Rv1272

0.598

0.371

H37Rv_KO_SugABC

-1.583

-0.783

H37Rv_KO_MbtN

-0.154

0.084

Trans05

0.584

-0.21

macrophage_unactivated

-0.805

-1.626

IL1

-1.51

-4.494

Rapamycin

-2.725

-4.342

Tcell

0.124

-2.023

GMCSF

1.296

-1.946

IFNab

-0.632

-5.629

IFNg

-1.513

-4.049

IFNg_GMCSF1

-1.103

-1.951

Rv1432_day32

1.269

1.442

Rv1565c_day32

0.0

1.29

secA2_input

-0.875

2.204

delta_Rv3594

-0.644

0.367

delta_Rv3717

-0.849

0.388

delta_Rv3811

0.125

-1.13

delta_Rv0954

-1.226

-2.087

PonA1

-0.568

-0.559

EccD1_KO

0.224

1.079

EspI_KO

-0.821

1.586

PE35_KO

0.198

-0.718

PPE68_KO

0.269

-1.357

glycerol2

0.349

1.684

lignocerate

1.062

2.681

oleate

-0.38

0.829

phosphatidylcholine

0.381

1.594

acetate

0.667

3.812

glucAc

1.062

3.156

Rv0950ko

0.865

0.154

Rv1096ko

0.986

1.852

Rv3684ko

-1.605

1.156

delta_otsA_trehalose

3.188

0.329