TnSeqCorr

Top 10 genes with highest correlation to Rv1823/-:

update plotcorrelationlink to info on gene
Rv0012/- (cc=0.8471) info on Rv0012/-
Rv1825/- (cc=0.8321) info on Rv1825/-
Rv1824/- (cc=0.7407) info on Rv1824/-
Rv3586/- (cc=0.7127) info on Rv3586/-
Rv2203/- (cc=0.6944) info on Rv2203/-
Rv0483/lprQ (cc=0.6835) info on Rv0483/lprQ
Rv2091c/- (cc=0.6767) info on Rv2091c/-
Rv1331/- (cc=0.6466) info on Rv1331/-
Rv2171/lppM (cc=0.633) info on Rv2171/lppM
Rv3682/ponA2 (cc=0.5926) info on Rv3682/ponA2

Correlation of Rv1823/- with Rv3682/ponA2

Normalized LFCs for Rv1823/-:
(description and provenance of datasets)
Rv1823/-Rv3682/ponA2
Fe_supp_jason_reseq

2.807

2.333

low_pH_jason_reseq

1.302

0.862

NO_jason_reseq

-1.273

0.735

B6_jason_reseq

0.723

-0.246

MHCII_jason_reseq

0.818

0.189

Isoniazid02

-0.074

-0.941

Rifampicin4

-2.989

-6.0

Ethambutol3

-1.369

0.383

Meropenem3

-0.63

-4.704

Vancomycin16

-4.717

-6.0

Rv2680_day32

-2.814

-1.468

H37Rv_KO_MarP

5.537

2.554

hypoxia_3wks

-1.483

-3.118

hypoxia_6wks

-2.088

-2.159

glycerol

0.056

0.054

cholesterol

-0.676

0.315

AJ

-1.849

-1.388

Bibs02

-0.525

0.356

Bibs02c

-1.269

0.671

BL6

-2.291

-0.809

BL6a

-1.637

0.053

BXD01

-2.743

-1.496

BXD010

-2.697

-1.577

BXD011

-1.517

-0.592

BXD03

-2.848

-0.875

BXD04

-2.481

-1.42

BXD05

-2.465

-1.087

BXD06

-2.811

-1.533

BXD07

-2.777

-1.383

BXD08

-2.668

-1.424

BXD09

-2.959

-1.614

CAST

-2.459

-2.644

CCcont

0.021

2.728

DS01

-3.389

-1.528

DS02

-3.121

-1.301

DS04

-3.009

-0.6

DS0c

-1.86

1.051

GP01

-1.808

0.527

GP02

-1.669

-0.775

GP0c

-0.924

-0.659

NOD

-2.312

-1.814

NZO

-3.094

-1.731

PWK

-3.44

-2.416

H37Rv_KO_CtpC

0.067

0.703

H37Rv_KO_CtpD

0.035

-0.392

H37Rv_KO_Rv1272

-1.166

-1.409

H37Rv_KO_SugABC

-1.987

0.769

H37Rv_KO_MbtN

-0.952

0.201

Trans05

-1.345

-0.782

macrophage_unactivated

0.0

1.016

IL1

-0.243

-0.572

Rapamycin

0.239

0.353

Tcell

-0.554

-1.098

GMCSF

-0.694

-0.161

IFNab

-0.795

0.973

IFNg

0.208

-0.901

IFNg_GMCSF1

-0.826

-0.396

Rv1432_day32

-1.752

-0.763

Rv1565c_day32

1.047

6.0

secA2_input

1.291

1.645

delta_Rv3594

-0.471

1.034

delta_Rv3717

-2.153

-0.876

delta_Rv3811

-1.374

0.193

delta_Rv0954

-1.395

1.442

PonA1

-0.643

-4.498

EccD1_KO

-3.526

-2.434

EspI_KO

-2.892

-1.891

PE35_KO

-0.21

-1.006

PPE68_KO

-1.344

0.573

glycerol2

-1.665

-2.071

lignocerate

0.124

-1.006

oleate

-2.691

-3.116

phosphatidylcholine

0.63

-2.3

acetate

2.233

0.595

glucAc

1.894

0.056

Rv0950ko

0.6

-0.591

Rv1096ko

-2.962

-3.553

Rv3684ko

-0.059

1.136

delta_otsA_trehalose

0.289

-0.184