Top 10 genes with highest correlation to Rv1180/pks3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1181/pks4 | (cc=0.8102) | info on Rv1181/pks4 |
| Rv1182/papA3 | (cc=0.7699) | info on Rv1182/papA3 |
| Rv0228/- | (cc=0.7665) | info on Rv0228/- |
| Rv0914c/- | (cc=0.7249) | info on Rv0914c/- |
| Rv3354/- | (cc=0.7113) | info on Rv3354/- |
| Rv3295/- | (cc=0.6993) | info on Rv3295/- |
| Rv2681/- | (cc=0.6772) | info on Rv2681/- |
| Rv1453/- | (cc=0.6648) | info on Rv1453/- |
| Rv1708/- | (cc=0.6578) | info on Rv1708/- |
| Rv2669/- | (cc=0.6576) | info on Rv2669/- |
Correlation of Rv1180/pks3 with Rv3354/-
Normalized LFCs for Rv1180/pks3:
(description and provenance of datasets)
| Rv1180/pks3 | Rv3354/- | |
| Fe_supp_jason_reseq | -0.279 | -1.138 |
| low_pH_jason_reseq | 2.652 | -0.381 |
| NO_jason_reseq | 0.0 | -0.793 |
| B6_jason_reseq | 2.843 | 0.985 |
| MHCII_jason_reseq | 3.318 | 1.019 |
| Isoniazid02 | -0.345 | 1.043 |
| Rifampicin4 | -0.374 | 0.125 |
| Ethambutol3 | 0.176 | 0.398 |
| Meropenem3 | -0.865 | 1.179 |
| Vancomycin16 | 0.225 | 0.162 |
| Rv2680_day32 | -0.493 | 0.659 |
| H37Rv_KO_MarP | 0.415 | 0.422 |
| hypoxia_3wks | -0.319 | -0.347 |
| hypoxia_6wks | 0.234 | -0.595 |
| glycerol | -0.016 | 0.674 |
| cholesterol | 0.163 | 0.892 |
| AJ | 0.356 | -0.171 |
| Bibs02 | -0.254 | -0.029 |
| Bibs02c | 0.646 | 0.596 |
| BL6 | -2.892 | -0.912 |
| BL6a | -0.405 | -0.067 |
| BXD01 | -2.644 | -1.687 |
| BXD010 | -1.603 | -1.434 |
| BXD011 | -2.421 | -2.812 |
| BXD03 | -1.964 | -2.487 |
| BXD04 | -1.702 | -1.729 |
| BXD05 | -1.519 | -1.146 |
| BXD06 | -2.271 | -1.932 |
| BXD07 | -2.302 | -2.262 |
| BXD08 | -2.404 | -1.667 |
| BXD09 | -2.206 | -2.542 |
| CAST | 0.307 | 0.097 |
| CCcont | -2.242 | -1.82 |
| DS01 | 0.371 | -0.077 |
| DS02 | 0.298 | 0.269 |
| DS04 | 0.292 | 0.395 |
| DS0c | 0.093 | -0.597 |
| GP01 | -1.877 | -1.486 |
| GP02 | -1.623 | -0.295 |
| GP0c | -3.264 | -0.754 |
| NOD | -0.194 | -0.169 |
| NZO | 0.069 | 0.127 |
| PWK | 0.374 | 0.367 |
| H37Rv_KO_CtpC | -1.492 | -0.788 |
| H37Rv_KO_CtpD | -2.799 | -1.146 |
| H37Rv_KO_Rv1272 | -2.581 | -0.927 |
| H37Rv_KO_SugABC | -1.747 | -0.855 |
| H37Rv_KO_MbtN | -1.345 | -1.624 |
| Trans05 | -1.761 | -0.244 |
| macrophage_unactivated | -3.27 | -1.654 |
| IL1 | -2.174 | -1.649 |
| Rapamycin | -1.534 | -1.034 |
| Tcell | -3.454 | -1.473 |
| GMCSF | -2.609 | -2.118 |
| IFNab | -2.276 | -2.056 |
| IFNg | -3.175 | -0.949 |
| IFNg_GMCSF1 | -1.518 | -0.641 |
| Rv1432_day32 | 0.411 | 0.3 |
| Rv1565c_day32 | 0.692 | 0.635 |
| secA2_input | 0.944 | 0.645 |
| delta_Rv3594 | 0.2 | -0.395 |
| delta_Rv3717 | -1.016 | -0.21 |
| delta_Rv3811 | -1.142 | 0.592 |
| delta_Rv0954 | -1.262 | 0.58 |
| PonA1 | 0.077 | -0.802 |
| EccD1_KO | 1.457 | 1.217 |
| EspI_KO | -0.106 | 1.201 |
| PE35_KO | 0.694 | 0.204 |
| PPE68_KO | 0.557 | 1.254 |
| glycerol2 | -0.684 | 1.595 |
| lignocerate | 0.737 | 1.672 |
| oleate | -0.489 | 0.822 |
| phosphatidylcholine | -0.066 | 1.291 |
| acetate | -0.299 | 1.047 |
| glucAc | -0.016 | 1.449 |
| Rv0950ko | 1.227 | 0.365 |
| Rv1096ko | 0.826 | 0.268 |
| Rv3684ko | 0.419 | 0.933 |
| delta_otsA_trehalose | 0.724 | 0.808 |