Top 10 genes with highest correlation to Rv1180/pks3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1181/pks4 | (cc=0.8102) | info on Rv1181/pks4 |
| Rv1182/papA3 | (cc=0.7699) | info on Rv1182/papA3 |
| Rv0228/- | (cc=0.7665) | info on Rv0228/- |
| Rv0914c/- | (cc=0.7249) | info on Rv0914c/- |
| Rv3354/- | (cc=0.7113) | info on Rv3354/- |
| Rv3295/- | (cc=0.6993) | info on Rv3295/- |
| Rv2681/- | (cc=0.6772) | info on Rv2681/- |
| Rv1453/- | (cc=0.6648) | info on Rv1453/- |
| Rv1708/- | (cc=0.6578) | info on Rv1708/- |
| Rv2669/- | (cc=0.6576) | info on Rv2669/- |
Correlation of Rv1180/pks3 with Rv0914c/-
Normalized LFCs for Rv1180/pks3:
(description and provenance of datasets)
| Rv1180/pks3 | Rv0914c/- | |
| Fe_supp_jason_reseq | -0.279 | 0.264 |
| low_pH_jason_reseq | 2.652 | 0.53 |
| NO_jason_reseq | 0.0 | 0.289 |
| B6_jason_reseq | 2.843 | 0.9 |
| MHCII_jason_reseq | 3.318 | 1.272 |
| Isoniazid02 | -0.345 | -0.453 |
| Rifampicin4 | -0.374 | 0.157 |
| Ethambutol3 | 0.176 | -0.378 |
| Meropenem3 | -0.865 | 0.2 |
| Vancomycin16 | 0.225 | 0.478 |
| Rv2680_day32 | -0.493 | -1.695 |
| H37Rv_KO_MarP | 0.415 | 0.509 |
| hypoxia_3wks | -0.319 | 0.319 |
| hypoxia_6wks | 0.234 | -0.065 |
| glycerol | -0.016 | -0.913 |
| cholesterol | 0.163 | -0.512 |
| AJ | 0.356 | 0.089 |
| Bibs02 | -0.254 | -0.827 |
| Bibs02c | 0.646 | -0.594 |
| BL6 | -2.892 | -1.486 |
| BL6a | -0.405 | -1.083 |
| BXD01 | -2.644 | -1.172 |
| BXD010 | -1.603 | -0.826 |
| BXD011 | -2.421 | -1.499 |
| BXD03 | -1.964 | -1.526 |
| BXD04 | -1.702 | -1.597 |
| BXD05 | -1.519 | -0.898 |
| BXD06 | -2.271 | -1.799 |
| BXD07 | -2.302 | -1.234 |
| BXD08 | -2.404 | -0.887 |
| BXD09 | -2.206 | -1.291 |
| CAST | 0.307 | 0.315 |
| CCcont | -2.242 | -1.536 |
| DS01 | 0.371 | 0.811 |
| DS02 | 0.298 | 0.625 |
| DS04 | 0.292 | 0.682 |
| DS0c | 0.093 | 0.108 |
| GP01 | -1.877 | -0.3 |
| GP02 | -1.623 | -1.785 |
| GP0c | -3.264 | -0.838 |
| NOD | -0.194 | 0.291 |
| NZO | 0.069 | -0.097 |
| PWK | 0.374 | 0.091 |
| H37Rv_KO_CtpC | -1.492 | -0.724 |
| H37Rv_KO_CtpD | -2.799 | -2.503 |
| H37Rv_KO_Rv1272 | -2.581 | -0.961 |
| H37Rv_KO_SugABC | -1.747 | -0.286 |
| H37Rv_KO_MbtN | -1.345 | -1.36 |
| Trans05 | -1.761 | 0.021 |
| macrophage_unactivated | -3.27 | -0.556 |
| IL1 | -2.174 | -0.329 |
| Rapamycin | -1.534 | -0.58 |
| Tcell | -3.454 | -1.03 |
| GMCSF | -2.609 | -0.993 |
| IFNab | -2.276 | -1.091 |
| IFNg | -3.175 | -0.73 |
| IFNg_GMCSF1 | -1.518 | 0.182 |
| Rv1432_day32 | 0.411 | 0.242 |
| Rv1565c_day32 | 0.692 | 0.899 |
| secA2_input | 0.944 | 0.485 |
| delta_Rv3594 | 0.2 | 0.528 |
| delta_Rv3717 | -1.016 | 0.064 |
| delta_Rv3811 | -1.142 | 0.238 |
| delta_Rv0954 | -1.262 | 0.393 |
| PonA1 | 0.077 | 0.65 |
| EccD1_KO | 1.457 | 0.273 |
| EspI_KO | -0.106 | 0.399 |
| PE35_KO | 0.694 | -0.219 |
| PPE68_KO | 0.557 | 0.038 |
| glycerol2 | -0.684 | -0.371 |
| lignocerate | 0.737 | 0.089 |
| oleate | -0.489 | -0.647 |
| phosphatidylcholine | -0.066 | -0.434 |
| acetate | -0.299 | -0.047 |
| glucAc | -0.016 | 0.582 |
| Rv0950ko | 1.227 | 0.522 |
| Rv1096ko | 0.826 | 0.814 |
| Rv3684ko | 0.419 | 1.497 |
| delta_otsA_trehalose | 0.724 | 0.0 |