Top 10 genes with highest correlation to Rv1180/pks3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1181/pks4 | (cc=0.8102) | info on Rv1181/pks4 |
| Rv1182/papA3 | (cc=0.7699) | info on Rv1182/papA3 |
| Rv0228/- | (cc=0.7665) | info on Rv0228/- |
| Rv0914c/- | (cc=0.7249) | info on Rv0914c/- |
| Rv3354/- | (cc=0.7113) | info on Rv3354/- |
| Rv3295/- | (cc=0.6993) | info on Rv3295/- |
| Rv2681/- | (cc=0.6772) | info on Rv2681/- |
| Rv1453/- | (cc=0.6648) | info on Rv1453/- |
| Rv1708/- | (cc=0.6578) | info on Rv1708/- |
| Rv2669/- | (cc=0.6576) | info on Rv2669/- |
Correlation of Rv1180/pks3 with Rv0228/-
Normalized LFCs for Rv1180/pks3:
(description and provenance of datasets)
| Rv1180/pks3 | Rv0228/- | |
| Fe_supp_jason_reseq | -0.279 | 1.07 |
| low_pH_jason_reseq | 2.652 | 0.0 |
| NO_jason_reseq | 0.0 | 0.0 |
| B6_jason_reseq | 2.843 | 1.759 |
| MHCII_jason_reseq | 3.318 | 0.37 |
| Isoniazid02 | -0.345 | -0.167 |
| Rifampicin4 | -0.374 | 0.558 |
| Ethambutol3 | 0.176 | -0.14 |
| Meropenem3 | -0.865 | 0.128 |
| Vancomycin16 | 0.225 | 0.796 |
| Rv2680_day32 | -0.493 | 0.0 |
| H37Rv_KO_MarP | 0.415 | -0.684 |
| hypoxia_3wks | -0.319 | 0.678 |
| hypoxia_6wks | 0.234 | -0.626 |
| glycerol | -0.016 | 0.585 |
| cholesterol | 0.163 | 0.915 |
| AJ | 0.356 | 0.05 |
| Bibs02 | -0.254 | 0.56 |
| Bibs02c | 0.646 | -1.66 |
| BL6 | -2.892 | -2.023 |
| BL6a | -0.405 | -2.66 |
| BXD01 | -2.644 | -2.107 |
| BXD010 | -1.603 | -2.072 |
| BXD011 | -2.421 | -2.06 |
| BXD03 | -1.964 | -2.187 |
| BXD04 | -1.702 | -2.0 |
| BXD05 | -1.519 | -2.177 |
| BXD06 | -2.271 | -2.159 |
| BXD07 | -2.302 | -2.24 |
| BXD08 | -2.404 | -2.151 |
| BXD09 | -2.206 | -2.273 |
| CAST | 0.307 | -0.389 |
| CCcont | -2.242 | -2.131 |
| DS01 | 0.371 | -0.727 |
| DS02 | 0.298 | -1.942 |
| DS04 | 0.292 | 0.779 |
| DS0c | 0.093 | -1.431 |
| GP01 | -1.877 | -1.597 |
| GP02 | -1.623 | -1.346 |
| GP0c | -3.264 | -2.103 |
| NOD | -0.194 | -0.83 |
| NZO | 0.069 | -0.285 |
| PWK | 0.374 | 0.168 |
| H37Rv_KO_CtpC | -1.492 | -2.628 |
| H37Rv_KO_CtpD | -2.799 | -1.922 |
| H37Rv_KO_Rv1272 | -2.581 | -2.281 |
| H37Rv_KO_SugABC | -1.747 | -1.503 |
| H37Rv_KO_MbtN | -1.345 | -1.667 |
| Trans05 | -1.761 | -1.983 |
| macrophage_unactivated | -3.27 | -2.923 |
| IL1 | -2.174 | -2.747 |
| Rapamycin | -1.534 | -2.842 |
| Tcell | -3.454 | -3.017 |
| GMCSF | -2.609 | -2.445 |
| IFNab | -2.276 | -2.799 |
| IFNg | -3.175 | -2.475 |
| IFNg_GMCSF1 | -1.518 | -1.386 |
| Rv1432_day32 | 0.411 | 0.0 |
| Rv1565c_day32 | 0.692 | 0.0 |
| secA2_input | 0.944 | 1.565 |
| delta_Rv3594 | 0.2 | 0.402 |
| delta_Rv3717 | -1.016 | 0.0 |
| delta_Rv3811 | -1.142 | 0.205 |
| delta_Rv0954 | -1.262 | 0.0 |
| PonA1 | 0.077 | 0.0 |
| EccD1_KO | 1.457 | -0.865 |
| EspI_KO | -0.106 | -0.359 |
| PE35_KO | 0.694 | -0.368 |
| PPE68_KO | 0.557 | -0.841 |
| glycerol2 | -0.684 | 0.0 |
| lignocerate | 0.737 | 0.591 |
| oleate | -0.489 | 0.0 |
| phosphatidylcholine | -0.066 | 0.193 |
| acetate | -0.299 | 0.0 |
| glucAc | -0.016 | 0.0 |
| Rv0950ko | 1.227 | 0.793 |
| Rv1096ko | 0.826 | 1.143 |
| Rv3684ko | 0.419 | 0.452 |
| delta_otsA_trehalose | 0.724 | 0.0 |