Top 10 genes with highest correlation to Rv1180/pks3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1181/pks4 | (cc=0.8102) | info on Rv1181/pks4 |
| Rv1182/papA3 | (cc=0.7699) | info on Rv1182/papA3 |
| Rv0228/- | (cc=0.7665) | info on Rv0228/- |
| Rv0914c/- | (cc=0.7249) | info on Rv0914c/- |
| Rv3354/- | (cc=0.7113) | info on Rv3354/- |
| Rv3295/- | (cc=0.6993) | info on Rv3295/- |
| Rv2681/- | (cc=0.6772) | info on Rv2681/- |
| Rv1453/- | (cc=0.6648) | info on Rv1453/- |
| Rv1708/- | (cc=0.6578) | info on Rv1708/- |
| Rv2669/- | (cc=0.6576) | info on Rv2669/- |
Correlation of Rv1180/pks3 with Rv2669/-
Normalized LFCs for Rv1180/pks3:
(description and provenance of datasets)
| Rv1180/pks3 | Rv2669/- | |
| Fe_supp_jason_reseq | -0.279 | -0.069 |
| low_pH_jason_reseq | 2.652 | -1.332 |
| NO_jason_reseq | 0.0 | -1.205 |
| B6_jason_reseq | 2.843 | 3.037 |
| MHCII_jason_reseq | 3.318 | 2.498 |
| Isoniazid02 | -0.345 | 0.706 |
| Rifampicin4 | -0.374 | 0.49 |
| Ethambutol3 | 0.176 | -0.122 |
| Meropenem3 | -0.865 | 0.0 |
| Vancomycin16 | 0.225 | 0.698 |
| Rv2680_day32 | -0.493 | -0.875 |
| H37Rv_KO_MarP | 0.415 | 2.138 |
| hypoxia_3wks | -0.319 | -0.961 |
| hypoxia_6wks | 0.234 | 0.309 |
| glycerol | -0.016 | 1.34 |
| cholesterol | 0.163 | 1.133 |
| AJ | 0.356 | -0.398 |
| Bibs02 | -0.254 | 0.126 |
| Bibs02c | 0.646 | 0.191 |
| BL6 | -2.892 | 0.227 |
| BL6a | -0.405 | -1.116 |
| BXD01 | -2.644 | -1.807 |
| BXD010 | -1.603 | -2.339 |
| BXD011 | -2.421 | -2.809 |
| BXD03 | -1.964 | -3.074 |
| BXD04 | -1.702 | -0.599 |
| BXD05 | -1.519 | -2.654 |
| BXD06 | -2.271 | -2.704 |
| BXD07 | -2.302 | -3.148 |
| BXD08 | -2.404 | -1.028 |
| BXD09 | -2.206 | -1.753 |
| CAST | 0.307 | -0.27 |
| CCcont | -2.242 | -1.547 |
| DS01 | 0.371 | 1.702 |
| DS02 | 0.298 | 1.15 |
| DS04 | 0.292 | 1.428 |
| DS0c | 0.093 | 0.506 |
| GP01 | -1.877 | -2.315 |
| GP02 | -1.623 | -0.686 |
| GP0c | -3.264 | -0.337 |
| NOD | -0.194 | 2.193 |
| NZO | 0.069 | 0.0 |
| PWK | 0.374 | -0.74 |
| H37Rv_KO_CtpC | -1.492 | -0.85 |
| H37Rv_KO_CtpD | -2.799 | -3.068 |
| H37Rv_KO_Rv1272 | -2.581 | -3.802 |
| H37Rv_KO_SugABC | -1.747 | 0.268 |
| H37Rv_KO_MbtN | -1.345 | -2.497 |
| Trans05 | -1.761 | -3.393 |
| macrophage_unactivated | -3.27 | -1.31 |
| IL1 | -2.174 | -3.921 |
| Rapamycin | -1.534 | -4.057 |
| Tcell | -3.454 | -1.678 |
| GMCSF | -2.609 | -1.497 |
| IFNab | -2.276 | -2.606 |
| IFNg | -3.175 | -4.049 |
| IFNg_GMCSF1 | -1.518 | -1.012 |
| Rv1432_day32 | 0.411 | 0.0 |
| Rv1565c_day32 | 0.692 | 0.284 |
| secA2_input | 0.944 | 0.302 |
| delta_Rv3594 | 0.2 | 1.741 |
| delta_Rv3717 | -1.016 | 1.995 |
| delta_Rv3811 | -1.142 | 1.787 |
| delta_Rv0954 | -1.262 | -0.096 |
| PonA1 | 0.077 | 0.372 |
| EccD1_KO | 1.457 | -0.181 |
| EspI_KO | -0.106 | -1.708 |
| PE35_KO | 0.694 | 0.155 |
| PPE68_KO | 0.557 | -0.176 |
| glycerol2 | -0.684 | 1.014 |
| lignocerate | 0.737 | 0.216 |
| oleate | -0.489 | 0.366 |
| phosphatidylcholine | -0.066 | 0.667 |
| acetate | -0.299 | -0.336 |
| glucAc | -0.016 | 0.239 |
| Rv0950ko | 1.227 | 0.229 |
| Rv1096ko | 0.826 | 0.947 |
| Rv3684ko | 0.419 | 2.204 |
| delta_otsA_trehalose | 0.724 | 0.075 |