Top 10 genes with highest correlation to Rv1180/pks3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1181/pks4 | (cc=0.8102) | info on Rv1181/pks4 |
| Rv1182/papA3 | (cc=0.7699) | info on Rv1182/papA3 |
| Rv0228/- | (cc=0.7665) | info on Rv0228/- |
| Rv0914c/- | (cc=0.7249) | info on Rv0914c/- |
| Rv3354/- | (cc=0.7113) | info on Rv3354/- |
| Rv3295/- | (cc=0.6993) | info on Rv3295/- |
| Rv2681/- | (cc=0.6772) | info on Rv2681/- |
| Rv1453/- | (cc=0.6648) | info on Rv1453/- |
| Rv1708/- | (cc=0.6578) | info on Rv1708/- |
| Rv2669/- | (cc=0.6576) | info on Rv2669/- |
Correlation of Rv1180/pks3 with Rv1453/-
Normalized LFCs for Rv1180/pks3:
(description and provenance of datasets)
| Rv1180/pks3 | Rv1453/- | |
| Fe_supp_jason_reseq | -0.279 | 0.72 |
| low_pH_jason_reseq | 2.652 | 0.659 |
| NO_jason_reseq | 0.0 | -0.672 |
| B6_jason_reseq | 2.843 | 2.065 |
| MHCII_jason_reseq | 3.318 | 1.373 |
| Isoniazid02 | -0.345 | 1.302 |
| Rifampicin4 | -0.374 | 0.219 |
| Ethambutol3 | 0.176 | 0.876 |
| Meropenem3 | -0.865 | 0.7 |
| Vancomycin16 | 0.225 | 0.114 |
| Rv2680_day32 | -0.493 | 0.241 |
| H37Rv_KO_MarP | 0.415 | 0.793 |
| hypoxia_3wks | -0.319 | 0.905 |
| hypoxia_6wks | 0.234 | 1.054 |
| glycerol | -0.016 | -0.025 |
| cholesterol | 0.163 | -0.156 |
| AJ | 0.356 | 0.35 |
| Bibs02 | -0.254 | 0.738 |
| Bibs02c | 0.646 | 0.526 |
| BL6 | -2.892 | -1.143 |
| BL6a | -0.405 | -0.062 |
| BXD01 | -2.644 | -0.497 |
| BXD010 | -1.603 | -0.054 |
| BXD011 | -2.421 | -0.022 |
| BXD03 | -1.964 | -0.914 |
| BXD04 | -1.702 | -0.5 |
| BXD05 | -1.519 | -0.657 |
| BXD06 | -2.271 | -0.426 |
| BXD07 | -2.302 | -0.491 |
| BXD08 | -2.404 | -0.219 |
| BXD09 | -2.206 | -0.257 |
| CAST | 0.307 | -0.048 |
| CCcont | -2.242 | -1.652 |
| DS01 | 0.371 | 0.818 |
| DS02 | 0.298 | 0.756 |
| DS04 | 0.292 | 1.053 |
| DS0c | 0.093 | 1.053 |
| GP01 | -1.877 | -0.652 |
| GP02 | -1.623 | -1.909 |
| GP0c | -3.264 | -1.531 |
| NOD | -0.194 | 0.251 |
| NZO | 0.069 | 0.152 |
| PWK | 0.374 | 0.436 |
| H37Rv_KO_CtpC | -1.492 | -1.253 |
| H37Rv_KO_CtpD | -2.799 | 0.017 |
| H37Rv_KO_Rv1272 | -2.581 | -0.603 |
| H37Rv_KO_SugABC | -1.747 | -0.68 |
| H37Rv_KO_MbtN | -1.345 | -0.386 |
| Trans05 | -1.761 | -0.9 |
| macrophage_unactivated | -3.27 | -0.78 |
| IL1 | -2.174 | -0.528 |
| Rapamycin | -1.534 | -0.344 |
| Tcell | -3.454 | -0.261 |
| GMCSF | -2.609 | -0.232 |
| IFNab | -2.276 | -0.538 |
| IFNg | -3.175 | -0.794 |
| IFNg_GMCSF1 | -1.518 | -0.119 |
| Rv1432_day32 | 0.411 | 0.072 |
| Rv1565c_day32 | 0.692 | 0.264 |
| secA2_input | 0.944 | 0.41 |
| delta_Rv3594 | 0.2 | -0.118 |
| delta_Rv3717 | -1.016 | -1.099 |
| delta_Rv3811 | -1.142 | 0.079 |
| delta_Rv0954 | -1.262 | -0.846 |
| PonA1 | 0.077 | -0.374 |
| EccD1_KO | 1.457 | 0.503 |
| EspI_KO | -0.106 | -0.151 |
| PE35_KO | 0.694 | 0.277 |
| PPE68_KO | 0.557 | 0.336 |
| glycerol2 | -0.684 | 0.338 |
| lignocerate | 0.737 | 0.073 |
| oleate | -0.489 | 0.525 |
| phosphatidylcholine | -0.066 | 0.43 |
| acetate | -0.299 | -0.136 |
| glucAc | -0.016 | -0.174 |
| Rv0950ko | 1.227 | -0.32 |
| Rv1096ko | 0.826 | -0.787 |
| Rv3684ko | 0.419 | -0.331 |
| delta_otsA_trehalose | 0.724 | 1.851 |