Top 10 genes with highest correlation to Rv1136/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0084/hycD | (cc=0.5026) | info on Rv0084/hycD |
| Rv1494/mazE4 | (cc=0.4811) | info on Rv1494/mazE4 |
| Rv0899/ompA | (cc=0.4789) | info on Rv0899/ompA |
| Rv0034/- | (cc=0.4692) | info on Rv0034/- |
| Rv0800/pepC | (cc=0.4591) | info on Rv0800/pepC |
| Rv1731/gabD2 | (cc=0.4468) | info on Rv1731/gabD2 |
| Rv3083/- | (cc=0.445) | info on Rv3083/- |
| Rv1974/- | (cc=0.4435) | info on Rv1974/- |
| Rv3439c/- | (cc=0.4427) | info on Rv3439c/- |
| Rv3004/cfp6 | (cc=0.4378) | info on Rv3004/cfp6 |
Correlation of Rv1136/- with Rv1731/gabD2
Normalized LFCs for Rv1136/-:
(description and provenance of datasets)
| Rv1136/- | Rv1731/gabD2 | |
| Fe_supp_jason_reseq | -1.075 | 1.414 |
| low_pH_jason_reseq | -0.873 | -0.234 |
| NO_jason_reseq | -1.076 | -0.496 |
| B6_jason_reseq | 0.28 | 0.968 |
| MHCII_jason_reseq | 0.933 | 0.922 |
| Isoniazid02 | 1.455 | 2.222 |
| Rifampicin4 | 0.195 | 0.612 |
| Ethambutol3 | 1.571 | 1.846 |
| Meropenem3 | 0.42 | 0.787 |
| Vancomycin16 | 0.3 | 0.485 |
| Rv2680_day32 | -0.795 | -0.77 |
| H37Rv_KO_MarP | -0.412 | 0.976 |
| hypoxia_3wks | -0.275 | -0.311 |
| hypoxia_6wks | 1.524 | -0.762 |
| glycerol | 1.031 | 0.143 |
| cholesterol | 0.625 | 0.103 |
| AJ | -0.232 | -0.844 |
| Bibs02 | -0.521 | -0.906 |
| Bibs02c | 0.212 | -0.126 |
| BL6 | 0.237 | -0.135 |
| BL6a | -0.759 | -0.679 |
| BXD01 | 0.194 | -0.878 |
| BXD010 | 0.533 | -0.388 |
| BXD011 | -1.067 | -0.631 |
| BXD03 | 0.25 | -1.159 |
| BXD04 | -1.103 | -0.293 |
| BXD05 | 1.569 | -0.531 |
| BXD06 | 0.266 | -0.527 |
| BXD07 | 0.387 | -0.787 |
| BXD08 | -0.241 | -0.512 |
| BXD09 | -0.095 | -0.89 |
| CAST | -0.729 | -0.609 |
| CCcont | 0.369 | -0.868 |
| DS01 | 0.926 | -0.313 |
| DS02 | -0.066 | -0.098 |
| DS04 | 0.101 | -0.257 |
| DS0c | -0.985 | -0.456 |
| GP01 | 0.023 | -0.752 |
| GP02 | -0.284 | -1.025 |
| GP0c | -1.272 | -1.226 |
| NOD | -2.73 | -0.392 |
| NZO | 0.397 | -0.247 |
| PWK | -1.04 | 0.098 |
| H37Rv_KO_CtpC | -0.83 | -1.118 |
| H37Rv_KO_CtpD | -2.482 | -1.473 |
| H37Rv_KO_Rv1272 | -0.72 | -0.469 |
| H37Rv_KO_SugABC | -2.201 | 0.11 |
| H37Rv_KO_MbtN | -1.98 | -0.511 |
| Trans05 | -2.13 | -1.015 |
| macrophage_unactivated | -0.183 | -1.117 |
| IL1 | -0.581 | -1.272 |
| Rapamycin | -0.522 | -0.365 |
| Tcell | 1.597 | -1.153 |
| GMCSF | 1.761 | -0.481 |
| IFNab | 0.269 | -1.182 |
| IFNg | 1.331 | -0.195 |
| IFNg_GMCSF1 | -1.185 | -1.471 |
| Rv1432_day32 | -0.18 | -0.086 |
| Rv1565c_day32 | 0.556 | 0.305 |
| secA2_input | 1.049 | -0.916 |
| delta_Rv3594 | 1.655 | -0.028 |
| delta_Rv3717 | 2.103 | -0.068 |
| delta_Rv3811 | 1.358 | 0.315 |
| delta_Rv0954 | 1.368 | 1.269 |
| PonA1 | 0.107 | 0.173 |
| EccD1_KO | 0.467 | 0.355 |
| EspI_KO | 2.481 | -0.108 |
| PE35_KO | 1.986 | 0.703 |
| PPE68_KO | 1.6 | 0.771 |
| glycerol2 | 0.569 | 0.398 |
| lignocerate | 1.627 | 1.058 |
| oleate | -1.94 | -0.679 |
| phosphatidylcholine | 1.087 | 0.73 |
| acetate | 1.491 | 0.938 |
| glucAc | 1.359 | 0.898 |
| Rv0950ko | 1.423 | 0.332 |
| Rv1096ko | 1.686 | 1.062 |
| Rv3684ko | 0.295 | 0.694 |
| delta_otsA_trehalose | 0.122 | 0.492 |