Top 10 genes with highest correlation to Rv1049/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0178/- | (cc=0.4306) | info on Rv0178/- |
| Rv2229c/- | (cc=0.4059) | info on Rv2229c/- |
| Rv1325c/PE_PGRS24 | (cc=0.4039) | info on Rv1325c/PE_PGRS24 |
| Rv3549c/- | (cc=0.4006) | info on Rv3549c/- |
| Rv0541c/- | (cc=0.3995) | info on Rv0541c/- |
| Rv3229c/desA3 | (cc=0.3963) | info on Rv3229c/desA3 |
| Rv0199/- | (cc=0.3842) | info on Rv0199/- |
| Rv3072c/- | (cc=0.3748) | info on Rv3072c/- |
| Rv3913/trxB2 | (cc=0.3744) | info on Rv3913/trxB2 |
| Rv2271/- | (cc=0.3716) | info on Rv2271/- |
Correlation of Rv1049/- with Rv3549c/-
Normalized LFCs for Rv1049/-:
(description and provenance of datasets)
| Rv1049/- | Rv3549c/- | |
| Fe_supp_jason_reseq | 1.435 | -1.26 |
| low_pH_jason_reseq | 1.566 | 2.25 |
| NO_jason_reseq | 2.116 | 0.866 |
| B6_jason_reseq | -0.889 | -0.837 |
| MHCII_jason_reseq | -1.04 | -3.049 |
| Isoniazid02 | -0.501 | -0.447 |
| Rifampicin4 | 0.661 | -1.703 |
| Ethambutol3 | 0.9 | 1.058 |
| Meropenem3 | -0.254 | -0.649 |
| Vancomycin16 | 0.329 | -0.281 |
| Rv2680_day32 | -0.386 | -0.852 |
| H37Rv_KO_MarP | 0.078 | -0.484 |
| hypoxia_3wks | 0.817 | -0.754 |
| hypoxia_6wks | 0.221 | -0.779 |
| glycerol | -0.772 | 1.008 |
| cholesterol | -0.292 | -3.148 |
| AJ | -0.998 | -2.005 |
| Bibs02 | -1.552 | -3.331 |
| Bibs02c | -1.234 | -3.66 |
| BL6 | -0.563 | -1.24 |
| BL6a | -1.191 | -2.174 |
| BXD01 | 0.482 | -0.813 |
| BXD010 | -0.017 | -0.385 |
| BXD011 | 0.291 | -0.858 |
| BXD03 | -0.637 | -0.209 |
| BXD04 | 0.855 | 0.411 |
| BXD05 | -0.091 | -2.452 |
| BXD06 | 0.076 | -1.323 |
| BXD07 | 0.507 | -1.197 |
| BXD08 | 1.06 | -0.572 |
| BXD09 | 0.399 | -0.662 |
| CAST | -0.03 | -2.132 |
| CCcont | -0.265 | -0.765 |
| DS01 | -0.015 | -3.302 |
| DS02 | 0.814 | -0.058 |
| DS04 | 0.921 | -1.036 |
| DS0c | -0.352 | -0.614 |
| GP01 | -0.665 | -1.539 |
| GP02 | 0.163 | -1.65 |
| GP0c | -0.497 | 0.432 |
| NOD | 0.841 | -1.103 |
| NZO | 0.09 | -0.67 |
| PWK | -0.132 | -1.526 |
| H37Rv_KO_CtpC | -0.575 | -2.842 |
| H37Rv_KO_CtpD | 0.52 | -2.216 |
| H37Rv_KO_Rv1272 | 0.721 | 0.877 |
| H37Rv_KO_SugABC | 1.351 | 1.692 |
| H37Rv_KO_MbtN | -0.128 | -1.253 |
| Trans05 | -0.669 | -0.242 |
| macrophage_unactivated | 2.039 | -1.146 |
| IL1 | -0.039 | -0.243 |
| Rapamycin | -0.663 | -0.522 |
| Tcell | 0.316 | -0.411 |
| GMCSF | -1.89 | -0.449 |
| IFNab | -0.744 | 0.236 |
| IFNg | 0.259 | 0.208 |
| IFNg_GMCSF1 | 0.487 | 0.698 |
| Rv1432_day32 | 0.08 | -0.18 |
| Rv1565c_day32 | -0.799 | -3.172 |
| secA2_input | -0.767 | -0.476 |
| delta_Rv3594 | 0.613 | 0.584 |
| delta_Rv3717 | 1.971 | 0.457 |
| delta_Rv3811 | 1.899 | 0.626 |
| delta_Rv0954 | 0.849 | -0.174 |
| PonA1 | 0.731 | -0.223 |
| EccD1_KO | -0.569 | 0.98 |
| EspI_KO | -1.492 | 1.115 |
| PE35_KO | -0.893 | 0.394 |
| PPE68_KO | -0.352 | 0.637 |
| glycerol2 | 0.46 | -0.08 |
| lignocerate | 0.481 | 0.161 |
| oleate | 1.099 | -1.126 |
| phosphatidylcholine | 0.901 | -0.48 |
| acetate | -0.203 | -0.095 |
| glucAc | 0.84 | 0.485 |
| Rv0950ko | 0.286 | 0.85 |
| Rv1096ko | 1.312 | 1.737 |
| Rv3684ko | 0.557 | 0.924 |
| delta_otsA_trehalose | 1.043 | 0.823 |