Top 10 genes with highest correlation to Rv1049/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0178/- | (cc=0.4306) | info on Rv0178/- |
| Rv2229c/- | (cc=0.4059) | info on Rv2229c/- |
| Rv1325c/PE_PGRS24 | (cc=0.4039) | info on Rv1325c/PE_PGRS24 |
| Rv3549c/- | (cc=0.4006) | info on Rv3549c/- |
| Rv0541c/- | (cc=0.3995) | info on Rv0541c/- |
| Rv3229c/desA3 | (cc=0.3963) | info on Rv3229c/desA3 |
| Rv0199/- | (cc=0.3842) | info on Rv0199/- |
| Rv3072c/- | (cc=0.3748) | info on Rv3072c/- |
| Rv3913/trxB2 | (cc=0.3744) | info on Rv3913/trxB2 |
| Rv2271/- | (cc=0.3716) | info on Rv2271/- |
Correlation of Rv1049/- with Rv3072c/-
Normalized LFCs for Rv1049/-:
(description and provenance of datasets)
| Rv1049/- | Rv3072c/- | |
| Fe_supp_jason_reseq | 1.435 | 0.183 |
| low_pH_jason_reseq | 1.566 | 0.299 |
| NO_jason_reseq | 2.116 | -0.05 |
| B6_jason_reseq | -0.889 | -0.809 |
| MHCII_jason_reseq | -1.04 | -0.83 |
| Isoniazid02 | -0.501 | -2.282 |
| Rifampicin4 | 0.661 | 0.409 |
| Ethambutol3 | 0.9 | -1.577 |
| Meropenem3 | -0.254 | -0.836 |
| Vancomycin16 | 0.329 | -0.881 |
| Rv2680_day32 | -0.386 | -0.339 |
| H37Rv_KO_MarP | 0.078 | 0.09 |
| hypoxia_3wks | 0.817 | -0.339 |
| hypoxia_6wks | 0.221 | -0.238 |
| glycerol | -0.772 | -0.967 |
| cholesterol | -0.292 | -0.91 |
| AJ | -0.998 | 0.523 |
| Bibs02 | -1.552 | 0.166 |
| Bibs02c | -1.234 | -1.679 |
| BL6 | -0.563 | -0.064 |
| BL6a | -1.191 | -1.29 |
| BXD01 | 0.482 | -0.397 |
| BXD010 | -0.017 | -1.046 |
| BXD011 | 0.291 | -0.715 |
| BXD03 | -0.637 | -1.325 |
| BXD04 | 0.855 | 0.0 |
| BXD05 | -0.091 | -0.355 |
| BXD06 | 0.076 | -0.32 |
| BXD07 | 0.507 | -1.335 |
| BXD08 | 1.06 | -0.169 |
| BXD09 | 0.399 | -0.092 |
| CAST | -0.03 | -0.118 |
| CCcont | -0.265 | -0.189 |
| DS01 | -0.015 | 0.044 |
| DS02 | 0.814 | 0.424 |
| DS04 | 0.921 | 0.242 |
| DS0c | -0.352 | -0.435 |
| GP01 | -0.665 | 0.309 |
| GP02 | 0.163 | 0.5 |
| GP0c | -0.497 | 0.942 |
| NOD | 0.841 | -0.503 |
| NZO | 0.09 | -0.24 |
| PWK | -0.132 | -0.013 |
| H37Rv_KO_CtpC | -0.575 | 0.857 |
| H37Rv_KO_CtpD | 0.52 | 1.134 |
| H37Rv_KO_Rv1272 | 0.721 | -0.704 |
| H37Rv_KO_SugABC | 1.351 | -0.987 |
| H37Rv_KO_MbtN | -0.128 | -0.962 |
| Trans05 | -0.669 | 0.016 |
| macrophage_unactivated | 2.039 | 0.379 |
| IL1 | -0.039 | -1.023 |
| Rapamycin | -0.663 | -0.718 |
| Tcell | 0.316 | -1.365 |
| GMCSF | -1.89 | -0.248 |
| IFNab | -0.744 | -0.828 |
| IFNg | 0.259 | -0.66 |
| IFNg_GMCSF1 | 0.487 | -0.035 |
| Rv1432_day32 | 0.08 | 1.352 |
| Rv1565c_day32 | -0.799 | -0.916 |
| secA2_input | -0.767 | -0.404 |
| delta_Rv3594 | 0.613 | 0.754 |
| delta_Rv3717 | 1.971 | 0.351 |
| delta_Rv3811 | 1.899 | 0.733 |
| delta_Rv0954 | 0.849 | 0.448 |
| PonA1 | 0.731 | 0.648 |
| EccD1_KO | -0.569 | -0.671 |
| EspI_KO | -1.492 | -1.406 |
| PE35_KO | -0.893 | -0.98 |
| PPE68_KO | -0.352 | -0.621 |
| glycerol2 | 0.46 | 0.378 |
| lignocerate | 0.481 | 1.335 |
| oleate | 1.099 | 0.262 |
| phosphatidylcholine | 0.901 | 0.866 |
| acetate | -0.203 | 1.79 |
| glucAc | 0.84 | 1.354 |
| Rv0950ko | 0.286 | 0.751 |
| Rv1096ko | 1.312 | 1.339 |
| Rv3684ko | 0.557 | 1.038 |
| delta_otsA_trehalose | 1.043 | 0.198 |